RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZACNQ401N2 412 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 PPM1LQ5SGD2 360 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 FOXR2Q6PJQ5 311 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 INTS8Q75QN2 995 aaKnown RBP13.95□□□□□ -0.18
VPS28-216ENST00000533806 TMEM86AQ8N2M4 240 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 KBTBD7Q8WVZ9 684 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 EEF2KMTQ96G04 330 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 DHTKD1Q96HY7 919 aaPredicted RBP13.95□□□□□ -0.18
VPS28-216ENST00000533806 PKMYT1Q99640 499 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 HSFX1Q9UBD0 423 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 SNX9Q9Y5X1 595 aa13.95□□□□□ -0.18
VPS28-216ENST00000533806 MTMR11A4FU01 709 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 SPDYE4A6NLX3 237 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 C2CD4DB7Z1M9 353 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 PI4K2BG5E9Z4 385 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 TULP1O00294 542 aaPredicted RBP13.94□□□□□ -0.18
VPS28-216ENST00000533806 HUS1O60921 280 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 FAM163BP0C2L3 166 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 CPB1P15086 417 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 CCNE1P24864 410 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 ATICP31939 592 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 SSTR3P32745 418 aaPredicted RBP13.94□□□□□ -0.18
VPS28-216ENST00000533806 PPP1R2P41236 205 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 VAMP7P51809 220 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 MYL6P60660 151 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 LRRC63Q05C16 580 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 PPP3CAQ08209 521 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 ADCY1Q08828 1119 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 CAMK4Q16566 473 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 TTI2Q6NXR4 508 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 SV2AQ7L0J3 742 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 OSTM1Q86WC4 334 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 METTL23Q86XA0 190 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 RNF135Q8IUD6 432 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 FAM186BQ8IYM0 893 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 ZDHHC14Q8IZN3 488 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 DUSP9Q99956 384 aaKnown RBP13.94□□□□□ -0.18
VPS28-216ENST00000533806 ACBD6Q9BR61 282 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 CLSTN2Q9H4D0 955 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 CYP4F11Q9HBI6 524 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 AVENQ9NQS1 362 aaPredicted RBP13.94□□□□□ -0.18
VPS28-216ENST00000533806 DNMT3BQ9UBC3 853 aaKnown RBP13.94□□□□□ -0.18
VPS28-216ENST00000533806 INSL5Q9Y5Q6 135 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 TSC2P49815 1807 aa13.94□□□□□ -0.18
VPS28-216ENST00000533806 MTCL1Q9Y4B5 1905 aaKnown RBP13.94□□□□□ -0.18
VPS28-216ENST00000533806 CLUHO75153 1309 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 TRIM49BA6NDI0 452 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 BIN1O00499 593 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 CETN3O15182 167 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 CCL16O15467 120 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 TACC1O75410 805 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 ELF1P32519 619 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 FKBP3Q00688 224 aaKnown RBP13.93□□□□□ -0.18
VPS28-216ENST00000533806 SMARCB1Q12824 385 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 DUSP4Q13115 394 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 NCOA4Q13772 614 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 GRASPQ7Z6J2 395 aaPredicted RBP13.93□□□□□ -0.18
VPS28-216ENST00000533806 THEM5Q8N1Q8 247 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 TRIML1Q8N9V2 468 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 ATAD1Q8NBU5 361 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 TMLHEQ9NVH6 421 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 HCFC1R1Q9NWW0 138 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 CEP72Q9P209 647 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 NR2E1Q9Y466 385 aa13.93□□□□□ -0.18
VPS28-216ENST00000533806 PRRG1O14668 218 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 PSMA7O14818 248 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 SLC16A3O15427 465 aaKnown RBP13.92□□□□□ -0.18
VPS28-216ENST00000533806 XYLBO75191 536 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 TRIM49P0CI25 452 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 TRIM49CP0CI26 452 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 WARSP23381 471 aaKnown RBP13.92□□□□□ -0.18
VPS28-216ENST00000533806 LMO2P25791 158 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 GTF2H1P32780 548 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 LHX1P48742 406 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 NTHL1P78549 312 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 WDR72Q3MJ13 1102 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 SLC39A12Q504Y0 691 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 FAM171BQ6P995 826 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 OTOP3Q7RTS5 596 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 ADGRF2Q8IZF7 708 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 TTC9BQ8N6N2 239 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 SYAP1Q96A49 352 aaPredicted RBP13.92□□□□□ -0.18
VPS28-216ENST00000533806 PGLYRP2Q96PD5 576 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 MED15Q96RN5 788 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 DNAJC25Q9H1X3 360 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 PIDD1Q9HB75 910 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 DDX43Q9NXZ2 648 aaKnown RBP13.92□□□□□ -0.18
VPS28-216ENST00000533806 EPS15L1Q9UBC2 864 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 R3HCC1Q9Y3T6 440 aaKnown RBP13.92□□□□□ -0.18
VPS28-216ENST00000533806 YIPF1Q9Y548 306 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 NME7Q9Y5B8 376 aa13.92□□□□□ -0.18
VPS28-216ENST00000533806 DENND4AQ7Z401 1863 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 NRG2O14511 850 aaPredicted RBP13.91□□□□□ -0.18
VPS28-216ENST00000533806 HCRTO43612 131 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 ASS1P00966 412 aaKnown RBP13.91□□□□□ -0.18
VPS28-216ENST00000533806 SP100P23497 879 aaPredicted RBP13.91□□□□□ -0.18
VPS28-216ENST00000533806 GCLMP48507 274 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 EPHA5P54756 1037 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 TWF1Q12792 350 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 TRPC3Q13507 836 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms