RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 XYLT2Q9H1B5 865 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 POMKQ9H5K3 350 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 AFF4Q9UHB7 1163 aaKnown RBP21.35■■□□□ 1.01
CPSF1-209ENST00000532725 DLL1O00548 723 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 VNN1O95497 513 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 VNN2O95498 520 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 STAU1O95793 577 aaKnown RBP21.34■■□□□ 1.01
CPSF1-209ENST00000532725 HOXA9P31269 272 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 MYL6P60660 151 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 ADCY1Q08828 1119 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 TRPC3Q13507 836 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 ZACNQ401N2 412 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 PPM1LQ5SGD2 360 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 FOXR2Q6PJQ5 311 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 CCDC149Q6ZUS6 474 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 SV2AQ7L0J3 742 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 TMEM86AQ8N2M4 240 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 SLC7A14Q8TBB6 771 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 DUSP9Q99956 384 aaKnown RBP21.34■■□□□ 1.01
CPSF1-209ENST00000532725 ZCWPW1Q9H0M4 648 aa21.34■■□□□ 1.01
CPSF1-209ENST00000532725 LOC730098B7Z3J9 87 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 GOLGA6L22H0YM25 854 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 GABRDO14764 452 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 PHACTR2O75167 634 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 KRT13P13646 458 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 CPB1P15086 417 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 ATICP31939 592 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 ELF1P32519 619 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 PPP3CAQ08209 521 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 BIRC3Q13489 604 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 KLHL10Q6JEL2 608 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 TTI2Q6NXR4 508 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 LRRTM3Q86VH5 581 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 GJD3Q8N144 294 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 SPATA18Q8TC71 538 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 NELFBQ8WX92 580 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 SMG7Q92540 1137 aaKnown RBP21.33■■□□□ 1.01
CPSF1-209ENST00000532725 VRTNQ9H8Y1 702 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 CYP4F11Q9HBI6 524 aa21.33■■□□□ 1.01
CPSF1-209ENST00000532725 SLC16A3O15427 465 aaKnown RBP21.32■■□□□ 1
CPSF1-209ENST00000532725 POU2F2P09086 479 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 FAM163BP0C2L3 166 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 EPB41P11171 864 aaKnown RBP21.32■■□□□ 1
CPSF1-209ENST00000532725 NCOA4Q13772 614 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 WDR72Q3MJ13 1102 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 OSTM1Q86WC4 334 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 SYAP1Q96A49 352 aaPredicted RBP21.32■■□□□ 1
CPSF1-209ENST00000532725 RPGRIP1Q96KN7 1286 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 ACBD6Q9BR61 282 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 NUP62CLQ9H1M0 184 aa21.32■■□□□ 1
CPSF1-209ENST00000532725 WDR6Q9NNW5 1121 aaKnown RBP21.32■■□□□ 1
CPSF1-209ENST00000532725 CCL16O15467 120 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 TRIM49P0CI25 452 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 TRIM49CP0CI26 452 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 GCLMP48507 274 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 LHX1P48742 406 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 FILIP1Q7Z7B0 1213 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 ATAD1Q8NBU5 361 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 KBTBD7Q8WVZ9 684 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 PGLYRP2Q96PD5 576 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 CRISPLD1Q9H336 500 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 PIDD1Q9HB75 910 aa21.31■■□□□ 1
CPSF1-209ENST00000532725 DDX43Q9NXZ2 648 aaKnown RBP21.31■■□□□ 1
CPSF1-209ENST00000532725 MUC3AQ02505 3323 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 BICDL2A1A5D9 508 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 PRRG1O14668 218 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 GTF2H1P32780 548 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 STX17P56962 302 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 DUSP4Q13115 394 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 PAK1Q13153 545 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 SGSM1Q2NKQ1 1148 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 ADGRF2Q8IZF7 708 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 CEP63Q96MT8 703 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 MMS19Q96T76 1030 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 CTNND2Q9UQB3 1225 aa21.3■■□□□ 1
CPSF1-209ENST00000532725 MTMR11A4FU01 709 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 TNFRSF10AO00220 468 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 XYLBO75191 536 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 TACC1O75410 805 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 WARSP23381 471 aaKnown RBP21.29■■□□□ 1
CPSF1-209ENST00000532725 LMO2P25791 158 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 SSTR3P32745 418 aaPredicted RBP21.29■■□□□ 1
CPSF1-209ENST00000532725 MYL7Q01449 175 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 SMARCB1Q12824 385 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 SLC39A12Q504Y0 691 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 GRASPQ7Z6J2 395 aaPredicted RBP21.29■■□□□ 1
CPSF1-209ENST00000532725 DCP1BQ8IZD4 617 aaKnown RBP21.29■■□□□ 1
CPSF1-209ENST00000532725 MLKLQ8NB16 471 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 ELMO3Q96BJ8 720 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 MED15Q96RN5 788 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 MRPL45Q9BRJ2 306 aaKnown RBP21.29■■□□□ 1
CPSF1-209ENST00000532725 TMEM8AQ9HCN3 771 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 DNMT3BQ9UBC3 853 aaKnown RBP21.29■■□□□ 1
CPSF1-209ENST00000532725 HSFX1Q9UBD0 423 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 USTQ9Y2C2 406 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 SLC27A5Q9Y2P5 690 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 INSL5Q9Y5Q6 135 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 DOCK6Q96HP0 2047 aa21.29■■□□□ 1
CPSF1-209ENST00000532725 TSC2P49815 1807 aa21.28■■□□□ 1
CPSF1-209ENST00000532725 HCRTO43612 131 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms