RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GOLGA8JA6NMD2 632 aa8□□□□□ -1.13
CD44-228ENST00000528455 P4HA2O15460 535 aa8□□□□□ -1.13
CD44-228ENST00000528455 TPM3P06753 285 aa8□□□□□ -1.13
CD44-228ENST00000528455 PFKMP08237 780 aa8□□□□□ -1.13
CD44-228ENST00000528455 ACRP10323 421 aa8□□□□□ -1.13
CD44-228ENST00000528455 BMP4P12644 408 aa8□□□□□ -1.13
CD44-228ENST00000528455 COPB1P53618 953 aaKnown RBP8□□□□□ -1.13
CD44-228ENST00000528455 YARSP54577 528 aaKnown RBP8□□□□□ -1.13
CD44-228ENST00000528455 CYP24A1Q07973 514 aa8□□□□□ -1.13
CD44-228ENST00000528455 SPEM2Q0P670 501 aa8□□□□□ -1.13
CD44-228ENST00000528455 BFSP1Q12934 665 aa8□□□□□ -1.13
CD44-228ENST00000528455 IKBKEQ14164 716 aa8□□□□□ -1.13
CD44-228ENST00000528455 ZBTB6Q15916 424 aa8□□□□□ -1.13
CD44-228ENST00000528455 DUOXA2Q1HG44 320 aa8□□□□□ -1.13
CD44-228ENST00000528455 SLC10A6Q3KNW5 377 aa8□□□□□ -1.13
CD44-228ENST00000528455 XKR4Q5GH76 650 aa8□□□□□ -1.13
CD44-228ENST00000528455 TMEM240Q5SV17 173 aa8□□□□□ -1.13
CD44-228ENST00000528455 TWF2Q6IBS0 349 aaKnown RBP8□□□□□ -1.13
CD44-228ENST00000528455 ZNF365Q70YC5 407 aa8□□□□□ -1.13
CD44-228ENST00000528455 C16orf59Q7L2K0 433 aa8□□□□□ -1.13
CD44-228ENST00000528455 CBWD2Q8IUF1 395 aa8□□□□□ -1.13
CD44-228ENST00000528455 BRSK2Q8IWQ3 736 aa8□□□□□ -1.13
CD44-228ENST00000528455 THNSL1Q8IYQ7 743 aa8□□□□□ -1.13
CD44-228ENST00000528455 SMG8Q8ND04 991 aaKnown RBP8□□□□□ -1.13
CD44-228ENST00000528455 ZSWIM2Q8NEG5 633 aa8□□□□□ -1.13
CD44-228ENST00000528455 CACTINQ8WUQ7 758 aaKnown RBP8□□□□□ -1.13
CD44-228ENST00000528455 PIK3R5Q8WYR1 880 aa8□□□□□ -1.13
CD44-228ENST00000528455 RSPH1Q8WYR4 309 aa8□□□□□ -1.13
CD44-228ENST00000528455 ANP32BQ92688 251 aaKnown RBP8□□□□□ -1.13
CD44-228ENST00000528455 SAAL1Q96ER3 474 aa8□□□□□ -1.13
CD44-228ENST00000528455 FAM161BQ96MY7 647 aa8□□□□□ -1.13
CD44-228ENST00000528455 FNBP1Q96RU3 617 aa8□□□□□ -1.13
CD44-228ENST00000528455 GSX2Q9BZM3 304 aa8□□□□□ -1.13
CD44-228ENST00000528455 TRIM5Q9C035 493 aa8□□□□□ -1.13
CD44-228ENST00000528455 WNT8AQ9H1J5 351 aa8□□□□□ -1.13
CD44-228ENST00000528455 VPS16Q9H269 839 aa8□□□□□ -1.13
CD44-228ENST00000528455 C11orf16Q9NQ32 467 aa8□□□□□ -1.13
CD44-228ENST00000528455 TOPORSQ9NS56 1045 aaPredicted RBP8□□□□□ -1.13
CD44-228ENST00000528455 FAM105AQ9NUU6 356 aa8□□□□□ -1.13
CD44-228ENST00000528455 STXBP5LQ9Y2K9 1186 aa8□□□□□ -1.13
CD44-228ENST00000528455 GIT1Q9Y2X7 761 aa8□□□□□ -1.13
CD44-228ENST00000528455 DERAQ9Y315 318 aa8□□□□□ -1.13
CD44-228ENST00000528455 PCDHB2Q9Y5E7 798 aa8□□□□□ -1.13
CD44-228ENST00000528455 GTF3C5Q9Y5Q8 519 aaPredicted RBP8□□□□□ -1.13
CD44-228ENST00000528455 UMODL1Q5DID0 1318 aa8□□□□□ -1.13
CD44-228ENST00000528455 TMEM265A0A087WTH1 108 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 GTPBP10A4D1E9 387 aaKnown RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 LACTBL1A8MY62 500 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 C9IYK1 514 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 EFCAB14O75071 495 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 NPTXRO95502 500 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 AFPP02771 609 aaKnown RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 C4BPAP04003 597 aaKnown RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 ITGA4P13612 1032 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 TNFSF9P41273 254 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 SRSF11Q05519 484 aaKnown RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 CETN1Q12798 172 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 TRIP4Q15650 581 aaPredicted RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 ENOX2Q16206 610 aaKnown RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 HSP90AA4PQ58FG1 418 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 MIIPQ5JXC2 388 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 FKBP15Q5T1M5 1219 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 RASIP1Q5U651 963 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 CNKSR3Q6P9H4 555 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 CDR2LQ86X02 465 aaPredicted RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 HERVK_113Q902F9 699 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 EDEM1Q92611 657 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 SLC35C1Q96A29 364 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 MRFAP1L1Q96HT8 127 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 SCLYQ96I15 445 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 EIF2AQ9BY44 585 aaKnown RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 SNTG2Q9NY99 539 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 RBAKQ9NYW8 714 aaPredicted RBP7.99□□□□□ -1.13
CD44-228ENST00000528455 IFNKQ9P0W0 207 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 COQ4Q9Y3A0 265 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 IPPQ9Y573 584 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 TET1Q8NFU7 2136 aa7.99□□□□□ -1.13
CD44-228ENST00000528455 SCN5AQ14524 2016 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 ANK1P16157 1881 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 A0A1W2PQC6 194 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 LGALS16A8MUM7 142 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 INPPL1O15357 1258 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 AP5Z1O43299 807 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 MGEA5O60502 916 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 N4BP1O75113 896 aaKnown RBP7.98□□□□□ -1.13
CD44-228ENST00000528455 ADCY5O95622 1261 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 PDGFAP04085 211 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 ACTN1P12814 892 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 KCNE1P15382 129 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 TNNI1P19237 187 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 CYP3A5P20815 502 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 MZF1P28698 734 aaPredicted RBP7.98□□□□□ -1.13
CD44-228ENST00000528455 MAP2K3P46734 347 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 FMO5P49326 533 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 ZNF75DP51815 510 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 OSTNP61366 133 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 DLG4P78352 724 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 UBXN1Q04323 297 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 PPP3CAQ08209 521 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 CCINQ13939 588 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms