RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 UBALD2Q8IYN6 164 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 FBXL6Q8N531 539 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 TMEM105Q8N8V8 129 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 RDH13Q8NBN7 331 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 PRSS33Q8NF86 280 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 ENGASEQ8NFI3 743 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 KBTBD7Q8WVZ9 684 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 ELMO3Q96BJ8 720 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 MFSD14AQ96MC6 490 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 PYM1Q9BRP8 204 aaKnown RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 MKNK1Q9BUB5 465 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 ZNF334Q9HCZ1 680 aaPredicted RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 GDAP2Q9NXN4 497 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 IGSF9Q9P2J2 1179 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.5□□□□□ -0.57
CD44-227ENST00000528086 UBE4BO95155 1302 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 MYO15AQ9UKN7 3530 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 ANAPC1Q9H1A4 1944 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 DMDP11532 3685 aa11.5□□□□□ -0.57
CD44-227ENST00000528086 ZNF233A6NK53 670 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 PRRG1O14668 218 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 GABRDO14764 452 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 XYLBO75191 536 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 ZNF202O95125 648 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 ODC1P11926 461 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 CPB1P15086 417 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 ATF6P18850 670 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 SYKP43405 635 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 TCF15Q12870 199 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 PSMD6Q15008 389 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 SNRNP35Q16560 246 aaKnown RBP11.49□□□□□ -0.57
CD44-227ENST00000528086 ELMSAN1Q6PJG2 1045 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 FMR1NBQ8N0W7 255 aaPredicted RBP11.49□□□□□ -0.57
CD44-227ENST00000528086 CSGALNACT2Q8N6G5 542 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 SHKBP1Q8TBC3 707 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 NOC3LQ8WTT2 800 aaKnown RBP11.49□□□□□ -0.57
CD44-227ENST00000528086 TMEM174Q8WUU8 243 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 RSPRY1Q96DX4 576 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 MCRS1Q96EZ8 462 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 CORO1BQ9BR76 489 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 SCAND2PQ9GZW5 306 aaPredicted RBP11.49□□□□□ -0.57
CD44-227ENST00000528086 IL21Q9HBE4 155 aa11.49□□□□□ -0.57
CD44-227ENST00000528086 F5P12259 2224 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 USP34Q70CQ2 3546 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 KIAA0391O15091 583 aaKnown RBP11.48□□□□□ -0.57
CD44-227ENST00000528086 ATP2C2O75185 946 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 RHOBTB3O94955 611 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 RPN1P04843 607 aaKnown RBP11.48□□□□□ -0.57
CD44-227ENST00000528086 PTPN2P17706 415 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 ACAT1P24752 427 aaKnown RBP11.48□□□□□ -0.57
CD44-227ENST00000528086 LMO2P25791 158 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 AVPR2P30518 371 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 GPR15P49685 360 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 GPC5P78333 572 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 DLG4P78352 724 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 CLDN10P78369 228 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 STXBP5Q5T5C0 1151 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 TANGO2Q6ICL3 276 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 GAREM2Q75VX8 874 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 TRAPPC11Q7Z392 1133 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 TMEM150AQ86TG1 271 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 CEP57L1Q8IYX8 460 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 LRRC52Q8N7C0 313 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 XXYLT1Q8NBI6 393 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 STKLD1Q8NE28 680 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 LRRC3BQ96PB8 259 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 PHOX2BQ99453 314 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 LPIN3Q9BQK8 851 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 XYLT2Q9H1B5 865 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 USP25Q9UHP3 1055 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 ITGA11Q9UKX5 1188 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 MAFFQ9ULX9 164 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 ARIH1Q9Y4X5 557 aaPredicted RBP11.48□□□□□ -0.57
CD44-227ENST00000528086 KIF26AQ9ULI4 1882 aaPredicted RBP11.48□□□□□ -0.57
CD44-227ENST00000528086 ZNF638Q14966 1978 aaKnown RBP11.48□□□□□ -0.57
CD44-227ENST00000528086 CACNA1IQ9P0X4 2223 aa11.48□□□□□ -0.57
CD44-227ENST00000528086 NUP210Q8TEM1 1887 aaPredicted RBP11.47□□□□□ -0.57
CD44-227ENST00000528086 VNN1O95497 513 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 LRG1P02750 347 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 CFHP08603 1231 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 PAX3P23760 479 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 ELF1P32519 619 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 RBP5P82980 135 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 BFSP1Q12934 665 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 SV2CQ496J9 727 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 SLC39A12Q504Y0 691 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 ZCWPW2Q504Y3 356 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 FAM78AQ5JUQ0 283 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 STXBP4Q6ZWJ1 553 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 USP37Q86T82 979 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 WDR49Q8IV35 697 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 SLC9A9Q8IVB4 645 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 GPR152Q8TDT2 470 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 PARD3BQ8TEW8 1205 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 ERCC4Q92889 916 aaPredicted RBP11.47□□□□□ -0.57
CD44-227ENST00000528086 CCDC127Q96BQ5 260 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 CGRRF1Q99675 332 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 KXD1Q9BQD3 176 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 SLC2A4RGQ9NR83 387 aa11.47□□□□□ -0.57
CD44-227ENST00000528086 TMEM30AQ9NV96 361 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms