RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CXCL10P02778 98 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 TUBBP07437 444 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 MMEP08473 750 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 GZMAP12544 262 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 DNA2P51530 1060 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 VSNL1P62760 191 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 FMO1Q01740 532 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 CUL2Q13617 745 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 GLRA4Q5JXX5 417 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 SPOPLQ6IQ16 392 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 HNRNPLLQ8WVV9 542 aaKnown RBP20.14■□□□□ 0.81
VPS28-207ENST00000526977 RPS6KC1Q96S38 1066 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 PPP1R12CQ9BZL4 782 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 SLC38A7Q9NVC3 462 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 AGAP1Q9UPQ3 857 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 STAU1O95793 577 aaKnown RBP20.14■□□□□ 0.81
VPS28-207ENST00000526977 CCL23P55773 120 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 CDR2Q01850 454 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 CFAP221Q4G0U5 840 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 WDR93Q6P2C0 686 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 ZNF598Q86UK7 904 aaKnown RBP20.14■□□□□ 0.81
VPS28-207ENST00000526977 DDX1Q92499 740 aaKnown RBP20.14■□□□□ 0.81
VPS28-207ENST00000526977 SCLYQ96I15 445 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 WNT8AQ9H1J5 351 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 RSAD1Q9HA92 442 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 RALGAPA2Q2PPJ7 1873 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 ARL5CA6NH57 179 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 ATF7P17544 494 aaPredicted RBP20.13■□□□□ 0.81
VPS28-207ENST00000526977 POLR2BP30876 1174 aaKnown RBP20.13■□□□□ 0.81
VPS28-207ENST00000526977 CYP2C18P33260 490 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 MYO1EQ12965 1108 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 SCARA3Q6AZY7 606 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 SYCE1Q8N0S2 351 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 LPPQ93052 612 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 HPDLQ96IR7 371 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 ZFP42Q96MM3 310 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 GAD1Q99259 594 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 NIF3L1Q9GZT8 377 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 ABCB6Q9NP58 842 aa20.13■□□□□ 0.81
VPS28-207ENST00000526977 RNF216Q9NWF9 866 aaPredicted RBP20.13■□□□□ 0.81
VPS28-207ENST00000526977 MEIS3P2A8K0S8 358 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 PTGESO14684 152 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 BUB1BO60566 1050 aaPredicted RBP20.12■□□□□ 0.81
VPS28-207ENST00000526977 THP07101 528 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 KRT5P13647 590 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 P4HA1P13674 534 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 RFC2P35250 354 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 MLH1P40692 756 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 ZNF667Q5HYK9 610 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 PEX26Q7Z412 305 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 DAAM2Q86T65 1068 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 NT5DC3Q86UY8 548 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 LRRC52Q8N7C0 313 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 RNF169Q8NCN4 708 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 GSTCDQ8NEC7 633 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 C18orf25Q96B23 403 aaPredicted RBP20.12■□□□□ 0.81
VPS28-207ENST00000526977 PPP1R10Q96QC0 940 aaKnown RBP20.12■□□□□ 0.81
VPS28-207ENST00000526977 TARSL2A2RTX5 802 aaKnown RBP20.12■□□□□ 0.81
VPS28-207ENST00000526977 CES2O00748 559 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 ENPP3O14638 875 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 GPC5P78333 572 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 CBX1P83916 185 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 TCEAL1Q15170 157 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 WDR72Q3MJ13 1102 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 ELAC1Q9H777 363 aaKnown RBP20.12■□□□□ 0.81
VPS28-207ENST00000526977 TUBGCP4Q9UGJ1 667 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 COG5Q9UP83 839 aa20.12■□□□□ 0.81
VPS28-207ENST00000526977 KCNK3O14649 394 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 ATP8B1O43520 1251 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 EN2P19622 333 aaPredicted RBP20.11■□□□□ 0.81
VPS28-207ENST00000526977 PDE6CP51160 858 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 GUCY2FP51841 1108 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 PTPROQ16827 1216 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 LONRF2Q1L5Z9 754 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 BEND6Q5SZJ8 279 aaPredicted RBP20.11■□□□□ 0.81
VPS28-207ENST00000526977 UBE2Q1Q7Z7E8 422 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 LINC01599Q8WXQ3 324 aa20.11■□□□□ 0.81
VPS28-207ENST00000526977 CALCAP01258 141 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 ACO1P21399 889 aaKnown RBP20.1■□□□□ 0.81
VPS28-207ENST00000526977 LRPAP1P30533 357 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 PNPLA4P41247 253 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 HADHBP55084 474 aaKnown RBP20.1■□□□□ 0.81
VPS28-207ENST00000526977 C9orf57Q5W0N0 161 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 RHOT2Q8IXI1 618 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 PBKQ96KB5 322 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 FAM124BQ9H5Z6 455 aaPredicted RBP20.1■□□□□ 0.81
VPS28-207ENST00000526977 RNF19AQ9NV58 838 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 TMEM161AQ9NX61 479 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 PIRO00625 290 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 KIAA0355O15063 1070 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 INPPL1O15357 1258 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 TIMP1P01033 207 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 YWHAEP62258 255 aaKnown RBP20.1■□□□□ 0.81
VPS28-207ENST00000526977 HES6Q96HZ4 224 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 LRRC1Q9BTT6 524 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 RBM12Q9NTZ6 932 aaKnown RBP20.1■□□□□ 0.81
VPS28-207ENST00000526977 NXF1Q9UBU9 619 aaKnown RBP20.1■□□□□ 0.81
VPS28-207ENST00000526977 AMFRQ9UKV5 643 aa20.1■□□□□ 0.81
VPS28-207ENST00000526977 TRIP11Q15643 1979 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 ERLIN1O75477 346 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms