RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CBX8Q9HC52 389 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 LIMA1Q9UHB6 759 aaKnown RBP22.24■■□□□ 1.15
CD44-222ENST00000526025 FBXL5Q9UKA1 691 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 MAFFQ9ULX9 164 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 TIMM13Q9Y5L4 95 aaPredicted RBP22.24■■□□□ 1.15
CD44-222ENST00000526025 TPM2P07951 284 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 ASPAP45381 313 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 KRT31Q15323 416 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 CTC1Q2NKJ3 1217 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 SMYD5Q6GMV2 418 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 LMO3Q8TAP4 145 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 SLC22A17Q8WUG5 538 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 HDAC7Q8WUI4 952 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 KBTBD7Q8WVZ9 684 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 MMS19Q96T76 1030 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 ACBD6Q9BR61 282 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 BCO2Q9BYV7 579 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 TSPY26PQ9H489 355 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 CYP3A43Q9HB55 503 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 APOBEC3GQ9HC16 384 aaKnown RBP22.23■■□□□ 1.15
CD44-222ENST00000526025 NXF1Q9UBU9 619 aaKnown RBP22.23■■□□□ 1.15
CD44-222ENST00000526025 CDY1Q9Y6F8 540 aa22.23■■□□□ 1.15
CD44-222ENST00000526025 SRGAP2BP0DMP2 458 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 KLRC2P26717 231 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 PCSK1P29120 753 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 CLCN4P51793 760 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 HSP90AA4PQ58FG1 418 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 TPGS2Q68CL5 300 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 TTC39CQ8N584 583 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 PABPC5Q96DU9 382 aaKnown RBP22.22■■□□□ 1.15
CD44-222ENST00000526025 RTP3Q9BQQ7 232 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 PI4K2AQ9BTU6 479 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 DPP7Q9UHL4 492 aa22.22■■□□□ 1.15
CD44-222ENST00000526025 GLUD1P00367 558 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 RPL17P18621 184 aaKnown RBP22.21■■□□□ 1.15
CD44-222ENST00000526025 OR1D2P34982 312 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 TPM4P67936 248 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 ROR1Q01973 937 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 SMARCB1Q12824 385 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 ADAM15Q13444 863 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 SPOPLQ6IQ16 392 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 LILRA6Q6PI73 481 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 ELMSAN1Q6PJG2 1045 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 RSPO2Q6UXX9 243 aaPredicted RBP22.21■■□□□ 1.15
CD44-222ENST00000526025 GBP6Q6ZN66 633 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 RTL10Q7L3V2 364 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 RBM23Q86U06 439 aaKnown RBP22.21■■□□□ 1.15
CD44-222ENST00000526025 MICALL1Q8N3F8 863 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 EHBP1Q8NDI1 1231 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 MAFAQ8NHW3 353 aaPredicted RBP22.21■■□□□ 1.15
CD44-222ENST00000526025 ZNF461Q8TAF7 563 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 DDX43Q9NXZ2 648 aaKnown RBP22.21■■□□□ 1.15
CD44-222ENST00000526025 POLIQ9UNA4 740 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 HCFC2Q9Y5Z7 792 aa22.21■■□□□ 1.15
CD44-222ENST00000526025 PER2O15055 1255 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 ADAM12O43184 909 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 ABLIM3O94929 683 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 CLSTN1O94985 981 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 CDK11BP21127 795 aaKnown RBP22.2■■□□□ 1.14
CD44-222ENST00000526025 TBXAS1P24557 533 aaPredicted RBP22.2■■□□□ 1.14
CD44-222ENST00000526025 INCA1Q0VD86 236 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 OR10T2Q8NGX3 314 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 CASP10Q92851 521 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 NT5C1BQ96P26 610 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 ZCWPW1Q9H0M4 648 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 PLEKHA4Q9H4M7 779 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 DZANK1Q9NVP4 752 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 GCNT4Q9P109 453 aa22.2■■□□□ 1.14
CD44-222ENST00000526025 PTPRDP23468 1912 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 TGM5O43548 720 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 LRRN2O75325 713 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 GNL1P36915 607 aaPredicted RBP22.19■■□□□ 1.14
CD44-222ENST00000526025 TSPY1Q01534 308 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 GPR17Q13304 367 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 EXOC3L4Q17RC7 722 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 APTXQ7Z2E3 356 aaKnown RBP22.19■■□□□ 1.14
CD44-222ENST00000526025 UNC93AQ86WB7 457 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 OSTM1Q86WC4 334 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 DCP1BQ8IZD4 617 aaKnown RBP22.19■■□□□ 1.14
CD44-222ENST00000526025 FAM81BQ96LP2 452 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 MRPL45Q9BRJ2 306 aaKnown RBP22.19■■□□□ 1.14
CD44-222ENST00000526025 ANP32EQ9BTT0 268 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 INTS2Q9H0H0 1204 aaKnown RBP22.19■■□□□ 1.14
CD44-222ENST00000526025 SNX25Q9H3E2 840 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 SMYD3Q9H7B4 428 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 TAB2Q9NYJ8 693 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 HSFX1Q9UBD0 423 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 AFF4Q9UHB7 1163 aaKnown RBP22.19■■□□□ 1.14
CD44-222ENST00000526025 FBXW11Q9UKB1 542 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 CDH9Q9ULB4 789 aa22.19■■□□□ 1.14
CD44-222ENST00000526025 WDR27A2RRH5 827 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 PAPLNO95428 1278 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 GLP2RO95838 553 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 GTF2F1P35269 517 aaKnown RBP eCLIP22.18■■□□□ 1.14
CD44-222ENST00000526025 COPB1P53618 953 aaKnown RBP22.18■■□□□ 1.14
CD44-222ENST00000526025 GCNT1Q02742 428 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 INTS6LQ5JSJ4 861 aaKnown RBP22.18■■□□□ 1.14
CD44-222ENST00000526025 TRIM65Q6PJ69 517 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 LUZP1Q86V48 1076 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 VN1R2Q8NFZ6 395 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms