RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CR2P20023 1033 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 COMTP21964 271 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 CTGFP29279 349 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 ABCD1P33897 745 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 ADCY8P40145 1251 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 PEX19P40855 299 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 FOXE3Q13461 319 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 TOP3AQ13472 1001 aaPredicted RBP6.21□□□□□ -1.42
NUP54-218ENST00000515460 BMS1Q14692 1282 aaKnown RBP6.21□□□□□ -1.42
NUP54-218ENST00000515460 ARHGEF6Q15052 776 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 USP39Q53GS9 565 aaKnown RBP6.21□□□□□ -1.42
NUP54-218ENST00000515460 ZMAT1Q5H9K5 638 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 AKNAD1Q5T1N1 836 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 WDR78Q5VTH9 848 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 AGBL4Q5VU57 503 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 DGLUCYQ7Z3D6 616 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 UBE3BQ7Z3V4 1068 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 NOSTRINQ8IVI9 506 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 EXTL1Q92935 676 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 ZBTB9Q96C00 473 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 SCYL1Q96KG9 808 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 CEP89Q96ST8 783 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 BTBD2Q9BX70 525 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 ANKRD2Q9GZV1 360 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 CSRNP2Q9H175 543 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 DEFB129Q9H1M3 183 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 CD209Q9NNX6 404 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 ABCF2Q9UG63 623 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 JRKLQ9Y4A0 524 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 DDX60Q8IY21 1712 aaKnown RBP6.21□□□□□ -1.42
NUP54-218ENST00000515460 AOX1Q06278 1338 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 FAM205AQ6ZU69 1335 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 MYO3BQ8WXR4 1341 aa6.21□□□□□ -1.42
NUP54-218ENST00000515460 TCRBV16S1A1N1A0A5B0 115 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 KRT38O76015 456 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 ACO1P21399 889 aaKnown RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 IGHMBP2P38935 993 aaKnown RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 ETV4P43268 484 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 INHBEP58166 350 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 CHRNDQ07001 517 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 NEXNQ0ZGT2 675 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 TCF15Q12870 199 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 TRAF1Q13077 416 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 TWISTNBQ3B726 338 aaPredicted RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 ZNF280DQ6N043 979 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 RNF207Q6ZRF8 634 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 C15orf52Q6ZUT6 534 aaKnown RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 OVCH1Q7RTY7 1134 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 ARMC9Q7Z3E5 817 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 DDX53Q86TM3 631 aaKnown RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 LILRB2Q8N423 598 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 HIPK4Q8NE63 616 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 RAET1EQ8TD07 263 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 SCLYQ96I15 445 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 CLMNQ96JQ2 1002 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 PRMT6Q96LA8 375 aaPredicted RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 OR14A2Q96R54 314 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 UBA5Q9GZZ9 404 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 DIAPH3Q9NSV4 1193 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 BTBD7Q9P203 1132 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 OAZ3Q9UMX2 235 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 FRMD4BQ9Y2L6 1034 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 NR2E1Q9Y466 385 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 MORC2Q9Y6X9 1032 aaPredicted RBP6.2□□□□□ -1.42
NUP54-218ENST00000515460 PTPN13Q12923 2485 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 IL16Q14005 1332 aa6.2□□□□□ -1.42
NUP54-218ENST00000515460 FOXP2O15409 715 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 MMEP08473 750 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 IL1R1P14778 569 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 MC4RP32245 332 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 NF2P35240 595 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 IL13RA1P78552 427 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 DLGAP5Q15398 846 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 PDCD2Q16342 344 aaPredicted RBP6.19□□□□□ -1.42
NUP54-218ENST00000515460 MAP9Q49MG5 647 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 FNDC3BQ53EP0 1204 aaKnown RBP6.19□□□□□ -1.42
NUP54-218ENST00000515460 TMEM177Q53S58 311 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 EPHA10Q5JZY3 1008 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 KRBA2Q6ZNG9 492 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 NOL8Q76FK4 1167 aaKnown RBP6.19□□□□□ -1.42
NUP54-218ENST00000515460 OTOP2Q7RTS6 562 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 APOBEC3FQ8IUX4 373 aaKnown RBP6.19□□□□□ -1.42
NUP54-218ENST00000515460 KRT222Q8N1A0 295 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 TXLNBQ8N3L3 684 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 IGSF22Q8N9C0 903 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 ANKRD20A12PQ8NF67 263 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 LINS1Q8NG48 757 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 CALML6Q8TD86 181 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 DNAAF4Q8WXU2 420 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 UBXN4Q92575 508 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 RMDN1Q96DB5 314 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 WNK4Q96J92 1243 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 PDLIM2Q96JY6 352 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 DRC1Q96MC2 740 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 MPHOSPH8Q99549 860 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 STK31Q9BXU1 1019 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 SLITRK6Q9H5Y7 841 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 TRIM39Q9HCM9 518 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 ETAA1Q9NY74 926 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 CDC42EP3Q9UKI2 254 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms