RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	DPY19L2P1	Q6NXN4	242 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	SYCE2	Q6PIF2	218 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	PPP1R32	Q7Z5V6	425 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	GRASP	Q7Z6J2	395 aa	Predicted RBP	5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	CATIP	Q7Z7H3	387 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	STAG1	Q8WVM7	1258 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	MTFMT	Q96DP5	389 aa	Known RBP	5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	ZNF764	Q96H86	408 aa	Predicted RBP	5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	AIFM3	Q96NN9	605 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	BBC3	Q96PG8	261 aa	Predicted RBP	5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	C1orf43	Q9BWL3	253 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	TINAGL1	Q9GZM7	467 aa	Predicted RBP	5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	PTGFRN	Q9P2B2	879 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	IP6K2	Q9UHH9	426 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402	SALL3	Q9BXA9	1300 aa		5.37	□□□□□ -1.55
MATR3-223	ENST00000514402		A0A0B4J269	797 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	PROP1	O75360	226 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	RFPL1	O75677	317 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	CD38	P28907	300 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	GRIA3	P42263	894 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	SOX10	P56693	466 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	PSMC1	P62191	440 aa	Known RBP	5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	MC2R	Q01718	297 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	KRTAP1-1	Q07627	177 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	TUBB3	Q13509	450 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	KAZN	Q674X7	775 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	RD3	Q7Z3Z2	195 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	FAM9A	Q8IZU1	332 aa	Predicted RBP	5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	FAM98A	Q8NCA5	519 aa	Known RBP	5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	B3GALNT2	Q8NCR0	500 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	SLC30A5	Q8TAD4	765 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	LRIG1	Q96JA1	1093 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	PUS7	Q96PZ0	661 aa	Known RBP	5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	TIMP4	Q99727	224 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	ALG8	Q9BVK2	526 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	SEMA4G	Q9NTN9	838 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	STXBP5L	Q9Y2K9	1186 aa		5.36	□□□□□ -1.55
MATR3-223	ENST00000514402	COL11A2	P13942	1736 aa	Predicted RBP	5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	PPP3CB	P16298	524 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	WT1	P19544	449 aa	Predicted RBP	5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	ITGAL	P20701	1170 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	PLA2G5	P39877	138 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	NDUFV1	P49821	464 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	NHLH1	Q02575	133 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	GTF2H3	Q13889	308 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	CCDC157	Q569K6	752 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	FBXO42	Q6P3S6	717 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	PSD4	Q8NDX1	1056 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	NSUN7	Q8NE18	718 aa	Known RBP	5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	LPIN2	Q92539	896 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	TNPO1	Q92973	898 aa	Known RBP	5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	SLC35A4	Q96G79	324 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	FBXL20	Q96IG2	436 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	NELL2	Q99435	816 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	RHOBTB2	Q9BYZ6	727 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	SLC12A5	Q9H2X9	1139 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	R3HDML	Q9H3Y0	253 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	PRDM13	Q9H4Q3	707 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	KIAA1586	Q9HCI6	787 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	NMRK2	Q9NPI5	230 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	SLAMF7	Q9NQ25	335 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	ENTPD2	Q9Y5L3	495 aa		5.35	□□□□□ -1.55
MATR3-223	ENST00000514402	WDR27	A2RRH5	827 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402		F5H697	171 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	C1R	P00736	705 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	HSPA6	P17066	643 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	PLS1	Q14651	629 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	IFIT1B	Q5T764	474 aa	Known RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	FAM160B1	Q5W0V3	765 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	SFRP4	Q6FHJ7	346 aa	Predicted RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	USP37	Q86T82	979 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	PPP1R3B	Q86XI6	285 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	BOLL	Q8N9W6	283 aa	Known RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	MYCBPAP	Q8TBZ2	947 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	DIS3L	Q8TF46	1054 aa	Known RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	PBK	Q96KB5	322 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	UROC1	Q96N76	676 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	CDH19	Q9H159	772 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	SARS2	Q9NP81	518 aa	Known RBP	5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	KLC4	Q9NSK0	619 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	NR2E3	Q9Y5X4	410 aa		5.34	□□□□□ -1.55
MATR3-223	ENST00000514402	SPATA31A6	Q5VVP1	1343 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402		H3BML4	177 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402		H3BUI4	141 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	AKAP10	O43572	662 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	MAPK10	P53779	464 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	TXNRD1	Q16881	649 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	ZNF362	Q5T0B9	420 aa	Predicted RBP	5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	TEDDM1	Q5T9Z0	273 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	TAF2	Q6P1X5	1199 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	PEG10	Q86TG7	708 aa	Known RBP	5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	FAM109A	Q8N4B1	249 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	TOR1AIP2	Q8NFQ8	470 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	ZNF180	Q9UJW8	692 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	AGAP1	Q9UPQ3	857 aa		5.33	□□□□□ -1.56
MATR3-223	ENST00000514402	RAD54B	Q9Y620	910 aa		5.33	□□□□□ -1.56

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms