RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SNHG28P0DPA3 235 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 MX2P20592 715 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 VHLP40337 213 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 KCNJ2P63252 427 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 PTK6Q13882 451 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 MORF4L2Q15014 288 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 RPS6KA2Q15349 733 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 FSCBQ5H9T9 825 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 EXOC3L1Q86VI1 746 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 RNF149Q8NC42 400 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 OR6B3Q8NGW1 331 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 AGAP11Q8TF27 550 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 FAM111AQ96PZ2 611 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 TMEM121Q9BTD3 319 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 WDR35Q9P2L0 1181 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SSX2IPQ9Y2D8 614 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 ZBTB12Q9Y330 459 aaPredicted RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 PIK3R2O00459 728 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 APOL1O14791 398 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 PSMD10O75832 226 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 KCNA3P22001 575 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 EFNA5P52803 228 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 HIC1Q14526 733 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 PRPSAP1Q14558 356 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 HEATR6Q6AI08 1181 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 SLC30A9Q6PML9 568 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 CDKL3Q8IVW4 592 aaPredicted RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 FBXO36Q8NEA4 188 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 PARD3BQ8TEW8 1205 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 LRRC15Q8TF66 581 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 BCL9LQ86UU0 1499 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 TMEM150BA6NC51 233 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 H3BRJ5 948 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SMAPO00193 183 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 POLRMTO00411 1230 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 SKAP2O75563 359 aaPredicted RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 SNRPAP09012 282 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 PDGFRAP16234 1089 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 VCAM1P19320 739 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 GARTP22102 1010 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 STX3Q13277 289 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 RCN1Q15293 331 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SEZ6Q53EL9 994 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 C4orf19Q8IY42 314 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 HSD17B14Q9BPX1 270 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 C2orf40Q9H1Z8 148 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 AGO4Q9HCK5 861 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 HOXC10Q9NYD6 342 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 MID2Q9UJV3 735 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SETD1AO15047 1707 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 NFIBO00712 420 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 PRKCBP05771 671 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SOX10P56693 466 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 THOC5Q13769 683 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 DNAL1Q4LDG9 190 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 TFDP3Q5H9I0 405 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SPOCD1Q6ZMY3 1216 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 PPWD1Q96BP3 646 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 MTBPQ96DY7 904 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 TMEM237Q96Q45 408 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 WRNIP1Q96S55 665 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 WDR18Q9BV38 432 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 OSBPL7Q9BZF2 842 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 NIF3L1Q9GZT8 377 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 DHX35Q9H5Z1 703 aaKnown RBP8.83□□□□□ -1
LIMCH1-216ENST00000512820 PCMTD2Q9NV79 361 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 SLC24A2Q9UI40 661 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 FIS1Q9Y3D6 152 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 KCPQ6ZWJ8 1503 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 DNM1LO00429 736 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 GIPC1O14908 333 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 NKRFO15226 690 aaKnown RBP eCLIP8.82□□□□□ -1
LIMCH1-216ENST00000512820 SPAG6O75602 509 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 ANKRD20A4Q4UJ75 823 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 ANKRD20A2Q5SQ80 823 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 ANKRD20A1Q5TYW2 823 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 RASSF3Q86WH2 238 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 RDM1Q8NG50 284 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 PAFAH2Q99487 392 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 MYLK2Q9H1R3 596 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 LRRC19Q9H756 370 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 THEGQ9P2T0 379 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 GOLGA8QA0A0J9YX86 632 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 GOLGA8OA6NCC3 632 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 TRIM49D1C9J1S8 452 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 GOLGA8NF8WBI6 632 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 CYP1A2P05177 515 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 PECAM1P16284 738 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 PTPN4P29074 926 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 TYK2P29597 1187 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 CHKAP35790 457 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 STAT5BP51692 787 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 OTUD4Q01804 1114 aaKnown RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 PKN2Q16513 984 aaKnown RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 KCNT1Q5JUK3 1230 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 ARID3BQ8IVW6 561 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 FAM71AQ8IYT1 594 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 ABRAQ8N0Z2 381 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 TRIM56Q9BRZ2 755 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms