RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 TAF6P49848 677 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 DHX8Q14562 1220 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 ENOX2Q16206 610 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 SV2CQ496J9 727 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 JADE1Q6IE81 842 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 NT5DC4Q86YG4 428 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 HVCN1Q96D96 273 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 TASP1Q9H6P5 420 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 EXOC7Q9UPT5 735 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 R3HCC1Q9Y3T6 440 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 COL4A3Q01955 1670 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 OTOGLQ3ZCN5 2332 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 NUP210Q8TEM1 1887 aaPredicted RBP22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 MYBPHLA2RUH7 354 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 CYP11A1P05108 521 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 DDX6P26196 483 aaKnown RBP eCLIP22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 CTHP32929 405 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 AVPR1AP37288 418 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 TXLNAP40222 546 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 TNFSF9P41273 254 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 CACNB1Q02641 598 aaPredicted RBP22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 ADALQ6DHV7 355 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 BRAPQ7Z569 592 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 TMC8Q8IU68 726 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 CPSF3Q9UKF6 684 aaKnown RBP22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 SMC3Q9UQE7 1217 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 SLC27A5Q9Y2P5 690 aa22.75■■□□□ 1.23
SQSTM1-210ENST00000506042 SOBPA7XYQ1 873 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 IL18RAPO95256 599 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 ADRB2P07550 413 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 ATXN1P54253 815 aaKnown RBP22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 TSPY1Q01534 308 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 SPEM2Q0P670 501 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 BFSP1Q12934 665 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 ITPRIPL2Q3MIP1 535 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 SLC39A12Q504Y0 691 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 C9orf57Q5W0N0 161 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 CC2D1AQ6P1N0 951 aaPredicted RBP22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 ZNF687Q8N1G0 1237 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 ATAD1Q8NBU5 361 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 KIF9Q9HAQ2 790 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 CCDC39Q9UFE4 941 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 COL4A2P08572 1712 aa22.74■■□□□ 1.23
SQSTM1-210ENST00000506042 ARNTLO00327 626 aa22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 GJB2P29033 226 aa22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 ZNF131P52739 623 aa22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 SATB1Q01826 763 aa22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 NFE2Q16621 373 aaPredicted RBP22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 LARP4BQ92615 738 aaKnown RBP22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 PYM1Q9BRP8 204 aaKnown RBP22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 LRRC3Q9BY71 257 aa22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 DNAJC25Q9H1X3 360 aa22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 UXTQ9UBK9 157 aaPredicted RBP22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 AGO2Q9UKV8 859 aaKnown RBP22.73■■□□□ 1.23
SQSTM1-210ENST00000506042 CACNA1AO00555 2505 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 NPHP3-ACAD11A0A0J9YXS1 232 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 CYB561D2O14569 222 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 MEFVO15553 781 aaPredicted RBP22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 TDGF1P13385 188 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 HOXA6P31267 233 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 GTF2BQ00403 316 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 GRSF1Q12849 480 aaKnown RBP eCLIP22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 CSRP2Q16527 193 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 ARSHQ5FYA8 562 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 CCDC26Q8TAB7 109 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 CACTINQ8WUQ7 758 aaKnown RBP22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 MRPS31Q92665 395 aaKnown RBP22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 RAD54LQ92698 747 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 DPP3Q9NY33 737 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 SEL1LQ9UBV2 794 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 PCDHB5Q9Y5E4 795 aa22.72■■□□□ 1.23
SQSTM1-210ENST00000506042 PIRO00625 290 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 LPAL2Q16609 132 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 LARP1BQ659C4 914 aaKnown RBP22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 POMGNT1Q8WZA1 660 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 HAPLN2Q9GZV7 340 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 ZCWPW1Q9H0M4 648 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 ST6GALNAC4Q9H4F1 302 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 SEMA4GQ9NTN9 838 aa22.71■■□□□ 1.23
SQSTM1-210ENST00000506042 ANO9A1A5B4 782 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 SHISA7A6NL88 538 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 CHURC1-FNTBB4DL54 471 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 LDHAP00338 332 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 NFICP08651 508 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 CSH1P0DML2 217 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 CSH2P0DML3 217 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 PLCG1P19174 1290 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 FNTBP49356 437 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 RPL10AP62906 217 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 IL31Q6EBC2 164 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 POTEHQ6S545 545 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 GAREM2Q75VX8 874 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 C12orf50Q8NA57 414 aaPredicted RBP22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 CCSER1Q9C0I3 900 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 ABI2Q9NYB9 513 aaPredicted RBP22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 STK17AQ9UEE5 414 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 SLC8A2Q9UPR5 921 aa22.7■■□□□ 1.22
SQSTM1-210ENST00000506042 TCHHQ07283 1943 aa22.69■■□□□ 1.22
SQSTM1-210ENST00000506042 CCDC163A0A0D9SF12 145 aa22.69■■□□□ 1.22
SQSTM1-210ENST00000506042 KPNA7A9QM74 516 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms