RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 MCRS1Q96EZ8 462 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 NRBF2Q96F24 287 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 UBAC1Q9BSL1 405 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CYTH4Q9UIA0 394 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SH3BGRL2Q9UJC5 107 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ADAM21Q9UKJ8 722 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SLC4A4Q9Y6R1 1079 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 UMODL1Q5DID0 1318 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SPDYE3A6NKU9 549 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 GOLGA8MH3BSY2 632 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 S100A9P06702 114 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 SRFP11831 508 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 EIF2AK2P19525 551 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 GDI1P31150 447 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PTK7Q13308 1070 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 BMP2KLQ5H9B9 411 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 MORN1Q5T089 497 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 APOBEC3HQ6NTF7 200 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 ANKRD54Q6NXT1 300 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 TEX9Q8N6V9 391 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PRR7Q8TB68 274 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 BRSK1Q8TDC3 778 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CARD6Q9BX69 1037 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 DLL3Q9NYJ7 618 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 SCOCQ9UIL1 159 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 MYO5BQ9ULV0 1848 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PYCARDQ9ULZ3 195 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PCDHGA3Q9Y5H0 932 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 E9PCH4 1651 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ADGRA3Q8IWK6 1321 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ESYT2A0FGR8 921 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PCP4L1A6NKN8 68 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 H3BRB1 525 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 NVLO15381 856 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 HSF2BPO75031 334 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GGPS1O95749 300 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GAS8O95995 478 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CCND1P24385 295 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GUCY1B3Q02153 619 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 RUNX1T1Q06455 604 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 TMEM62Q0P6H9 643 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 BAATQ14032 418 aaPredicted RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 STAG2Q8N3U4 1231 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ARFGAP2Q8N6H7 521 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 FAM71BQ8TC56 605 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ACER1Q8TDN7 264 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PLIN2Q99541 437 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CCDC28BQ9BUN5 200 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 MRIQ9BWK5 157 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 INTS2Q9H0H0 1204 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 BHMT2Q9H2M3 363 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 TUT1Q9H6E5 874 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 MRPL39Q9NYK5 338 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 STIM2Q9P246 746 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 STRIP2Q9ULQ0 834 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 POTEB3A0JP26 581 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 SNTNA6NMZ2 147 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 EFCAB8A8MWE9 144 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 TRAPPC3O43617 180 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GJB6O95452 261 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CYP11B2P19099 503 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CREMQ03060 361 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GOLGA8FQ08AF8 430 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GOLGA8DPQ0D2H9 430 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 COTL1Q14019 142 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 WDR45BQ5MNZ6 344 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 C1orf53Q5VUE5 145 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 RCSD1Q6JBY9 416 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ARMCX5Q6P1M9 558 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 POTEBQ6S5H4 581 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 SH3BP5LQ7L8J4 393 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 NPAS4Q8IUM7 802 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 TATDN2Q93075 761 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ATP2A3Q93084 1043 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CATSPER2Q96P56 530 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 PLEKHG4BQ96PX9 1271 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 OSBPL2Q9H1P3 480 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 ADAMTS10Q9H324 1103 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 CAAP1Q9H8G2 361 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 C1orf112Q9NSG2 853 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 GIMAP4Q9NUV9 329 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 DSEQ9UL01 958 aa5.41□□□□□ -1.54
USP54-216ENST00000498143 NOB1Q9ULX3 412 aaKnown RBP5.41□□□□□ -1.54
USP54-216ENST00000498143 SPAARA0A1B0GVQ0 90 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 SRRM3A6NNA2 597 aaPredicted RBP5.4□□□□□ -1.54
USP54-216ENST00000498143 FAM25EA8MYX2 175 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 SGK1O00141 431 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 CTIFO43310 598 aaKnown RBP5.4□□□□□ -1.54
USP54-216ENST00000498143 LCA5LO95447 670 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 KRT6AP02538 564 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 KRT6BP04259 564 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 KRT9P35527 623 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 IL12RB1P42701 662 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 KRT6CP48668 564 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 CLCN6P51797 869 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 RHDQ02161 417 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 OCA2Q04671 838 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ANO6Q4KMQ2 910 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ANKS4BQ8N8V4 417 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms