RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	PML	P29590	882 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	AQP5	P55064	265 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	JAM2	P57087	298 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CDK16	Q00536	496 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LSAMP	Q13449	338 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CNGA3	Q16281	694 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	GRIK5	Q16478	980 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SLC51A	Q86UW1	340 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RBM12B	Q8IXT5	1001 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CATSPER2	Q96P56	530 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ZMYM2	Q9UBW7	1377 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	XPOT	O43592	962 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	FOXD2	O60548	495 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SORBS2	O94875	1100 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	KRT1	P04264	644 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TFPT	P0C1Z6	253 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HOXD13	P35453	343 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TMEM63B	Q5T3F8	832 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	C11orf63	Q6NUN7	778 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	C1orf228	Q6PIY5	440 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TSHZ1	Q6ZSZ6	1077 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LRRC43	Q8N309	656 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	FAM81B	Q96LP2	452 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SENP7	Q9BQF6	1050 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TUBB6	Q9BUF5	446 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PARVG	Q9HBI0	331 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	COPE	O14579	308 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CA8	P35219	290 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HSPA2	P54652	639 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	GAD2	Q05329	585 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	STXBP4	Q6ZWJ1	553 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARMCX6	Q7L4S7	300 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	OGFOD1	Q8N543	542 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	NR1H4	Q96RI1	486 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PAFAH2	Q99487	392 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TRIM56	Q9BRZ2	755 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TMEM121	Q9BTD3	319 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SLC7A8	Q9UHI5	535 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TCEAL9	Q9UHQ7	104 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PCDHA3	Q9Y5H8	950 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	LTN1	O94822	1766 aa		11.16	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PRR5-ARHGAP8	B1AHC4	643 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	NOP56	O00567	594 aa	Known RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ZNF862	O60290	1169 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	C6orf222	P0C671	652 aa	Predicted RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CYP19A1	P11511	503 aa	Predicted RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RAG1	P15918	1043 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	POLD1	P28340	1107 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MAGEA8	P43361	318 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARHGAP8	P85298	464 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TTLL12	Q14166	644 aa	Predicted RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TBC1D9B	Q66K14	1250 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	KLC3	Q6P597	504 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DENND5B	Q6ZUT9	1274 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	UTS2B	Q765I0	119 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	PANX3	Q96QZ0	392 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DNPEP	Q9ULA0	475 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	MTO1	Q9Y2Z2	717 aa	Known RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARHGEF35	A5YM69	484 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	SIGLEC16	A6NMB1	481 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597		F5H423	210 aa	Predicted RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TGFB1I1	O43294	461 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TBC1D12	O60347	775 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	VCL	P18206	1134 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TCN1	P20061	433 aa	Predicted RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	NSF	P46459	744 aa	Known RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARHGAP4	P98171	946 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	BMPR2	Q13873	1038 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RASA3	Q14644	834 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	CHI3L2	Q15782	390 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HIF1A	Q16665	826 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	GSTA3	Q16772	222 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	HSP90AA5P	Q58FG0	334 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RALGPS1	Q5JS13	557 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DUS1L	Q6P1R4	473 aa	Known RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	ARPIN	Q7Z6K5	226 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	TREML1	Q86YW5	311 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	BBOF1	Q8ND07	529 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	RBMX2	Q9Y388	322 aa	Known RBP	11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597	DTNA	Q9Y4J8	743 aa		11.15	□□□□□ -0.62
TRAPPC12-223	ENST00000497597		A0A0J9YVX5	310 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	UBAP1L	F5GYI3	381 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CFB	P00751	764 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CIITA	P33076	1130 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	GRIA2	P42262	883 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MAPK10	P53779	464 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	RPS8	P62241	208 aa	Known RBP	11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	KBTBD12	Q3ZCT8	623 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PABPC1L	Q4VXU2	614 aa	Known RBP	11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	B3GNT6	Q6ZMB0	384 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ZSWIM2	Q8NEG5	633 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TTC25	Q96NG3	672 aa		11.15	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PIK3R2	O00459	728 aa		11.14	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	DGKI	O75912	1065 aa		11.14	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	AKR1B1	P15121	316 aa		11.14	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PHB	P35232	272 aa		11.14	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SLC12A3	P55017	1021 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms