RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 SKIV2LQ15477 1246 aaKnown RBP18.32■□□□□ 0.52
HDAC6-235ENST00000495515 CCDC85BQ15834 202 aaPredicted RBP18.32■□□□□ 0.52
HDAC6-235ENST00000495515 LIMS2Q7Z4I7 341 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 MAFAQ8NHW3 353 aaPredicted RBP18.32■□□□□ 0.52
HDAC6-235ENST00000495515 PPM1EQ8WY54 764 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 SEMA4DQ92854 862 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 PI4K2AQ9BTU6 479 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 DNAI2Q9GZS0 605 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 SNX25Q9H3E2 840 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 NDST4Q9H3R1 872 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 CYP3A43Q9HB55 503 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 CBX8Q9HC52 389 aa18.32■□□□□ 0.52
HDAC6-235ENST00000495515 CHD7Q9P2D1 2997 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 TBC1D4O60343 1298 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 ZNF18P17022 549 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 TRIM21P19474 475 aaKnown RBP18.31■□□□□ 0.52
HDAC6-235ENST00000495515 WARSP23381 471 aaKnown RBP18.31■□□□□ 0.52
HDAC6-235ENST00000495515 ZNF445P59923 1031 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 TSPY1Q01534 308 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 IQCB1Q15051 598 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 KRT31Q15323 416 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 GBP6Q6ZN66 633 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 GLYCTKQ8IVS8 523 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 TTC39CQ8N584 583 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 EHBP1Q8NDI1 1231 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 CASP10Q92851 521 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 NT5C1BQ96P26 610 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 ACBD6Q9BR61 282 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 FAM124BQ9H5Z6 455 aaPredicted RBP18.31■□□□□ 0.52
HDAC6-235ENST00000495515 DDX43Q9NXZ2 648 aaKnown RBP18.31■□□□□ 0.52
HDAC6-235ENST00000495515 LIMA1Q9UHB6 759 aaKnown RBP18.31■□□□□ 0.52
HDAC6-235ENST00000495515 POLIQ9UNA4 740 aa18.31■□□□□ 0.52
HDAC6-235ENST00000495515 GABRDO14764 452 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 CPB1P15086 417 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 TBXAS1P24557 533 aaPredicted RBP18.3■□□□□ 0.52
HDAC6-235ENST00000495515 GNL1P36915 607 aaPredicted RBP18.3■□□□□ 0.52
HDAC6-235ENST00000495515 CLCN4P51793 760 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 ARPP19P56211 112 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 FKBP15Q5T1M5 1219 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 TPGS2Q68CL5 300 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 SPOPLQ6IQ16 392 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 SCARA5Q6ZMJ2 495 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 PALB2Q86YC2 1186 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 DCP1BQ8IZD4 617 aaKnown RBP18.3■□□□□ 0.52
HDAC6-235ENST00000495515 OR6B3Q8NGW1 331 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 ZNF461Q8TAF7 563 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 HDAC7Q8WUI4 952 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 PABPC5Q96DU9 382 aaKnown RBP18.3■□□□□ 0.52
HDAC6-235ENST00000495515 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.3■□□□□ 0.52
HDAC6-235ENST00000495515 TAB2Q9NYJ8 693 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 GCNT4Q9P109 453 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 MAFFQ9ULX9 164 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 HCFC2Q9Y5Z7 792 aa18.3■□□□□ 0.52
HDAC6-235ENST00000495515 PRRC2BQ5JSZ5 2229 aaKnown RBP18.3■□□□□ 0.52
HDAC6-235ENST00000495515 SCN1AP35498 2009 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 SPDYE4A6NLX3 237 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 ELF1P32519 619 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 ASPAP45381 313 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 YWHAEP62258 255 aaKnown RBP18.29■□□□□ 0.52
HDAC6-235ENST00000495515 ROR1Q01973 937 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 SMARCB1Q12824 385 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 ADAM15Q13444 863 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 EXOC3L4Q17RC7 722 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 MIIPQ5JXC2 388 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 LLGL2Q6P1M3 1020 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 RSPO2Q6UXX9 243 aaPredicted RBP18.29■□□□□ 0.52
HDAC6-235ENST00000495515 EP400NLQ6ZTU2 488 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 SLC22A17Q8WUG5 538 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 KBTBD7Q8WVZ9 684 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 FAM81BQ96LP2 452 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 BCO2Q9BYV7 579 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 VPS16Q9H269 839 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 PLEKHA4Q9H4M7 779 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 SMYD3Q9H7B4 428 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 APOBEC3GQ9HC16 384 aaKnown RBP18.29■□□□□ 0.52
HDAC6-235ENST00000495515 DZANK1Q9NVP4 752 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 CLDND1Q9NY35 253 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 CDH9Q9ULB4 789 aa18.29■□□□□ 0.52
HDAC6-235ENST00000495515 LRRC10BA6NIK2 292 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 A8MXQ7 604 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 DLL1O00548 723 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 ADAM12O43184 909 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 TGM5O43548 720 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 GTF2F1P35269 517 aaKnown RBP eCLIP18.28■□□□□ 0.522e-8■■■■■ 34.1
HDAC6-235ENST00000495515 COPB1P53618 953 aaKnown RBP18.28■□□□□ 0.52
HDAC6-235ENST00000495515 LRMPQ12912 555 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 GPR17Q13304 367 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 COL19A1Q14993 1142 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 MAPRE1Q15691 268 aaKnown RBP18.28■□□□□ 0.52
HDAC6-235ENST00000495515 FILIP1LQ4L180 1135 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 LIN9Q5TKA1 542 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 TMEM184AQ6ZMB5 413 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 LUZP1Q86V48 1076 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 OR10T2Q8NGX3 314 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 MRPL45Q9BRJ2 306 aaKnown RBP18.28■□□□□ 0.52
HDAC6-235ENST00000495515 INTS2Q9H0H0 1204 aaKnown RBP18.28■□□□□ 0.52
HDAC6-235ENST00000495515 ZCWPW1Q9H0M4 648 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 HSD3B7Q9H2F3 369 aa18.28■□□□□ 0.52
HDAC6-235ENST00000495515 AFF4Q9UHB7 1163 aaKnown RBP18.28■□□□□ 0.52
HDAC6-235ENST00000495515 COG5Q9UP83 839 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms