RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 DDNO94850 711 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 CSPG5O95196 566 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 ITGA8P53708 1063 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 BCAR1P56945 870 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 RAPH1Q70E73 1250 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC20A1Q8WUM9 679 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 THTPAQ9BU02 230 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 DCLRE1BQ9H816 532 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 A1CFQ9NQ94 594 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 RHBDL2Q9NX52 303 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 PHTF1Q9UMS5 762 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 TISP43B9A030 160 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 O00370 1275 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 FANCGO15287 622 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 GTF2H1P32780 548 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 RFC5P40937 340 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 ARSEP51690 589 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC12A3P55017 1021 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 PHEXP78562 749 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 DHX38Q92620 1227 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 MTFR1LQ9H019 292 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 ETAA1Q9NY74 926 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 B2RBV5 119 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 VWA5AO00534 786 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 EPHB6O15197 1021 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 PJA2O43164 708 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 ACADSP16219 412 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 COILP38432 576 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 CLCN3P51790 818 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 THOC5Q13769 683 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 ICA1LQ8NDH6 482 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 PRPF31Q8WWY3 499 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 DHX35Q9H5Z1 703 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 APOBEC2Q9Y235 224 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 AFDNP55196 1824 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC25A27O95847 323 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 OVGP1Q12889 678 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 MMEL1Q495T6 779 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 ANKRD20A4Q4UJ75 823 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 RWDD4Q6NW29 188 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 C1orf228Q6PIY5 440 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 CRELD2Q6UXH1 353 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 PCGF5Q86SE9 256 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 C4orf19Q8IY42 314 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 C4orf32Q8N8J7 132 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 C17orf75Q9HAS0 396 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 KCNMB3Q9NPA1 279 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 TNFRSF8P28908 595 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 IER5Q5VY09 327 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 BTNL9Q6UXG8 535 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 ANO5Q75V66 913 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 BZW1Q7L1Q6 419 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 SPATA20Q8TB22 786 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 DNAJC19Q96DA6 116 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 MTBPQ96DY7 904 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 TSSK1BQ9BXA7 367 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 METTL5Q9NRN9 209 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 MAGEA13PA6NCF6 341 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 SRRM3A6NNA2 597 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 CSDE1O75534 798 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 SUPT20HL2P0C7V6 817 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 RARBP10826 455 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 KLHL38Q2WGJ6 581 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 GPAT2Q6NUI2 795 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 PPM1NQ8N819 430 aa17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 PURBQ96QR8 312 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 CDC42EP4Q9H3Q1 356 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-209ENST00000494080 DRD4P21917 467 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 ERMARDQ5T6L9 678 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 SV2AQ7L0J3 742 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC5A5Q92911 643 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 TMEM237Q96Q45 408 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC13A1Q9BZW2 595 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 KLC2Q9H0B6 622 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 ERAP1Q9NZ08 941 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 EPS15L1Q9UBC2 864 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 CCL15-CCL14A0A0B4J2E2 113 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 GMNNO75496 209 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 PDGFRBP09619 1106 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 MUTP22033 750 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC1A1P43005 524 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 CCL15Q16663 113 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 LVRNQ6Q4G3 990 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 B4GALNT2Q8NHY0 566 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 FNDC3AQ9Y2H6 1198 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 LMO7Q8WWI1 1683 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 GH1P01241 217 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 DGKZQ13574 1117 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 P3H1Q32P28 736 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 RNF139Q8WU17 664 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 SENP7Q9BQF6 1050 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 FAM49BQ9NUQ9 324 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 PDP2Q9P2J9 529 aa17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 MARCOQ9UEW3 520 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-209ENST00000494080 ARHGAP10A1A4S6 786 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 DNM1LO00429 736 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 PPP1R11O60927 126 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 PDGFRAP16234 1089 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 CYP2B6P20813 491 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 PRPSAP1Q14558 356 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms