RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ITGA4P13612 1032 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 KCNE1P15382 129 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 PCSK2P16519 638 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 GARTP22102 1010 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 GTF2F1P35269 517 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS52-219ENST00000493379 AFF1P51825 1210 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 CASP5P51878 434 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 STRN3Q13033 797 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 SMAD4Q13485 552 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 MYBPC2Q14324 1141 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 POSTNQ15063 836 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 ZBTB6Q15916 424 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 ENOX2Q16206 610 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 NFIL3Q16649 462 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 EPC2Q52LR7 807 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 ZC2HC1CQ53FD0 456 aaPredicted RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 NOMO2Q5JPE7 1267 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 C6orf118Q5T5N4 469 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 MRPL14Q6P1L8 145 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 LYSMD3Q7Z3D4 306 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 APBB1IPQ7Z5R6 666 aaPredicted RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 C12orf56Q8IXR9 622 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 TMEM192Q8IY95 271 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 COLGALT2Q8IYK4 626 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 GPR65Q8IYL9 337 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 RNF168Q8IYW5 571 aaPredicted RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 SCFD1Q8WVM8 642 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 RUBCNQ92622 972 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 MRPL38Q96DV4 380 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 ZBTB45Q96K62 511 aaPredicted RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 ADPGKQ9BRR6 497 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 MRPL9Q9BYD2 267 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 FGFBP2Q9BYJ0 223 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 GTPBP4Q9BZE4 634 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 CDT1Q9H211 546 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 SMOC2Q9H3U7 446 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 TMEM206Q9H813 350 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 MRPL44Q9H9J2 332 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 RSAD1Q9HA92 442 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 LMBRD1Q9NUN5 540 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 MIOSQ9NXC5 875 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 CGNQ9P2M7 1197 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 CPSF3Q9UKF6 684 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 ANGPTL2Q9UKU9 493 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 PLAGL2Q9UPG8 496 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 LZTS1Q9Y250 596 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 USP20Q9Y2K6 914 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 MRPL42Q9Y6G3 142 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 UBE4BO95155 1302 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 GOLGA6L4A6NEF3 574 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 TBKBP1A7MCY6 615 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 ANKRD63C9JTQ0 380 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 K7ENM7 598 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 PTGESO14684 152 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 OGTO15294 1046 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CLDN3O15551 220 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 GADD45BO75293 160 aaPredicted RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 NPTXRO95502 500 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 GALTP07902 379 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CLTAP09496 248 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 IDEP14735 1019 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 LAG3P18627 525 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 LIG1P18858 919 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 AFMP43652 599 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 UBE3AQ05086 875 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 STK4Q13043 487 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CAMK1Q14012 370 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 BTG3Q14201 252 aaPredicted RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 CBX2Q14781 532 aaPredicted RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 PTPN21Q16825 1174 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 SLC10A6Q3KNW5 377 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 FAM26FQ5R3K3 315 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 FOXR2Q6PJQ5 311 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 GLB1LQ6UWU2 654 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CRELD2Q6UXH1 353 aaPredicted RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 CDR2LQ86X02 465 aaPredicted RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 ZNF280BQ86YH2 543 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CD302Q8IX05 232 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 GRAMD1CQ8IYS0 662 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 HACE1Q8IYU2 909 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 LRRC43Q8N309 656 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 SPPL3Q8TCT6 385 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 LPPQ93052 612 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CCDC34Q96HJ3 373 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 HSH2DQ96JZ2 352 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 RPGRIP1Q96KN7 1286 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 PPP1R10Q96QC0 940 aaKnown RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 ACCSQ96QU6 501 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 DUSP9Q99956 384 aaKnown RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 TMEM175Q9BSA9 504 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 LMAN2LQ9H0V9 348 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 NXF3Q9H4D5 531 aaKnown RBP7.33□□□□□ -1.24
VPS52-219ENST00000493379 NRDE2Q9H7Z3 1164 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 AAASQ9NRG9 546 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 TBC1D13Q9NVG8 400 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 DMAC2Q9NW81 257 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 CNTN3Q9P232 1028 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 STK39Q9UEW8 545 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 PARP2Q9UGN5 583 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms