RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NOGQ13253 232 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 MPP3Q13368 585 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 FLYWCH1Q4VC44 716 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 CCDC93Q567U6 631 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 CRB2Q5IJ48 1285 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 ODR4Q5SWX8 454 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 HECTD2Q5U5R9 776 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 METRNLQ641Q3 311 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 HEATR3Q7Z4Q2 680 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 CATIPQ7Z7H3 387 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 ANKRD13AQ8IZ07 590 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 SLC44A3Q8N4M1 653 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 SH2D3CQ8N5H7 860 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 DCBLD1Q8N8Z6 715 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 BRIX1Q8TDN6 353 aaKnown RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 UBE2Q2Q8WVN8 375 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 TNPO1Q92973 898 aaKnown RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 TMEM125Q96AQ2 219 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 MVB12AQ96EY5 273 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 NAF1Q96HR8 494 aaKnown RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 FAM167AQ96KS9 214 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 IKZF4Q9H2S9 585 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 WDCPQ9H6R7 721 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 SARS2Q9NP81 518 aaKnown RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 RLIMQ9NVW2 624 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 LRIT1Q9P2V4 623 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 PNMA8BQ9ULN7 279 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 HS3ST4Q9Y661 456 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 CEP350Q5VT06 3117 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 BCL9LQ86UU0 1499 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 PHLPP1O60346 1717 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 FHOD3Q2V2M9 1422 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 ROBO1Q9Y6N7 1651 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 ABCA8O94911 1581 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 KDM5CP41229 1560 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 VWDEQ8N2E2 1590 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 CCDC195A0A1B0GUA6 201 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 LOC105371045A0A1W2PR82 267 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 LRRC14BA6NHZ5 514 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF785A8K8V0 405 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 F2RL2O00254 374 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 POLRMTO00411 1230 aaKnown RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 AP1G1O43747 822 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 PEX1O43933 1283 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 CHEK2O96017 543 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 GJB1P08034 283 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ELANEP08246 267 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 SBK3P0C264 359 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 KCNA2P16389 499 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 KCNJ5P48544 419 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 VAV2P52735 878 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF135P52742 658 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 HK3P52790 923 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 SATB1Q01826 763 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 DSC2Q02487 901 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 HNRNPA0Q13151 305 aaKnown RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 SNAPC2Q13487 334 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 B3GNTL1Q67FW5 361 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 PPP4R4Q6NUP7 873 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 Q6YL49 198 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 LDLRAD3Q86YD5 345 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 PDSS2Q86YH6 399 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 BEND2Q8NDZ0 799 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 JPH3Q8WXH2 748 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ASB10Q8WXI3 467 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 SNX19Q92543 992 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 SLC9A6Q92581 669 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 DDX17Q92841 729 aaKnown RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 SCAMP4Q969E2 229 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ZG16BQ96DA0 208 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 CDK5RAP3Q96JB5 506 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 LRGUKQ96M69 825 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 COQ10AQ96MF6 247 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 TRIB1Q96RU8 372 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ADAM2Q99965 735 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 HEPHQ9BQS7 1158 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 CNPPD1Q9BV87 410 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 GTPBP4Q9BZE4 634 aaKnown RBP2.75□□□□□ -1.97
HMGB1-208ENST00000490788 TOR3AQ9H497 397 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 TCF7L1Q9HCS4 588 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 NMRK2Q9NPI5 230 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 PNPOQ9NVS9 261 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 C11orf21Q9P2W6 132 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ZNHIT2Q9UHR6 403 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 DMRT1Q9Y5R6 373 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 CCDC88BA6NC98 1476 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 ATP10AO60312 1499 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 RTEL1-TNFRSF6BF6WH68 1400 aa2.75□□□□□ -1.97
HMGB1-208ENST00000490788 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 SYNMO15061 1565 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 CEP170BQ9Y4F5 1589 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 MAGI2Q86UL8 1455 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 PRAMEF33A0A0G2JMD5 474 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 MARCH11A6NNE9 402 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 AKAP10O43572 662 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TRIAP1O43715 76 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 PRAMEF10O60809 474 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 ESRRBO95718 433 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 RARBP10826 455 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 EGR2P11161 476 aaPredicted RBP2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms