RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PRPF38AQ8NAV1 312 aaKnown RBP4.1□□□□□ -1.75
CPSF3-205ENST00000489629 B3GALNT2Q8NCR0 500 aa4.1□□□□□ -1.75
CPSF3-205ENST00000489629 RFKQ969G6 155 aa4.1□□□□□ -1.75
CPSF3-205ENST00000489629 PBKQ96KB5 322 aa4.1□□□□□ -1.75
CPSF3-205ENST00000489629 BRD9Q9H8M2 597 aa4.1□□□□□ -1.75
CPSF3-205ENST00000489629 MAN1C1Q9NR34 630 aa4.1□□□□□ -1.75
CPSF3-205ENST00000489629 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.1□□□□□ -1.75
CPSF3-205ENST00000489629 WASHC2CQ9Y4E1 1318 aa4.1□□□□□ -1.75
CPSF3-205ENST00000489629 A0A0B4J269 797 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 LRRC14BA6NHZ5 514 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 GCOM1H8Y6P7 765 aaPredicted RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 POLRMTO00411 1230 aaKnown RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 GJB1P08034 283 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 ATXN1P54253 815 aaKnown RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 PSMC1P62191 440 aaKnown RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 SRSF4Q08170 494 aaKnown RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 TUBB3Q13509 450 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 RNF187Q5TA31 235 aaPredicted RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 TAF2Q6P1X5 1199 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 C1QL2Q7Z5L3 287 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 PNMA8AQ86V59 439 aaPredicted RBP4.09□□□□□ -1.75
CPSF3-205ENST00000489629 FAM109AQ8N4B1 249 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 C3orf20Q8ND61 904 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 PSD4Q8NDX1 1056 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 HASPINQ8TF76 798 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 C1orf43Q9BWL3 253 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 SMOC2Q9H3U7 446 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 CFAP97Q9P2B7 532 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 ST3GAL5Q9UNP4 418 aa4.09□□□□□ -1.75
CPSF3-205ENST00000489629 ZNF785A8K8V0 405 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 ALG1L2C9J202 215 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 F5H697 171 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 CHEK2O96017 543 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 RHOP08100 348 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 GNAI3P08754 354 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 FTH1P19P0C7X4 201 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 PCSK6P29122 969 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 ABCG1P45844 678 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 NDUFV1P49821 464 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 GNAI1P63096 354 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 TFF2Q03403 129 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 FAM50AQ14320 339 aaKnown RBP4.08□□□□□ -1.76
CPSF3-205ENST00000489629 KIF22Q14807 665 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 PTPN21Q16825 1174 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 FCRLBQ6BAA4 426 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 PPP1R32Q7Z5V6 425 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 AMIGO2Q86SJ2 522 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 RASAL3Q86YV0 1011 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 PRR18Q8N4B5 295 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 HAPLN3Q96S86 360 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 C1QTNF7Q9BXJ2 289 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 POLHQ9Y253 713 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 WNT6Q9Y6F9 365 aa4.08□□□□□ -1.76
CPSF3-205ENST00000489629 MANSC4A6NHS7 340 aaPredicted RBP4.07□□□□□ -1.76
CPSF3-205ENST00000489629 TRIAP1O43715 76 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 SOAT2O75908 522 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 URI1O94763 535 aaPredicted RBP4.07□□□□□ -1.76
CPSF3-205ENST00000489629 ARIH2O95376 493 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 PRKCGP05129 697 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 CELA2AP08217 269 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 RARBP10826 455 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 PDCP20941 246 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 PIK3CGP48736 1102 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 ZNF135P52742 658 aaPredicted RBP4.07□□□□□ -1.76
CPSF3-205ENST00000489629 CNPPD1Q9BV87 410 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 ALG8Q9BVK2 526 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 ASPSCR1Q9BZE9 553 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 SERTAD4Q9NUC0 356 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 GNL3LQ9NVN8 582 aaKnown RBP4.07□□□□□ -1.76
CPSF3-205ENST00000489629 DKK3Q9UBP4 350 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 PCDHA3Q9Y5H8 950 aa4.07□□□□□ -1.76
CPSF3-205ENST00000489629 SLC16A6O15403 523 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 IGSF3O75054 1194 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 KIF20AO95235 890 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 NR2F6P10588 404 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 SMARCA1P28370 1054 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 PHKA1P46020 1223 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 HK3P52790 923 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 NOGQ13253 232 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 BOP1Q14137 746 aaKnown RBP4.06□□□□□ -1.76
CPSF3-205ENST00000489629 RBM20Q5T481 1227 aaKnown RBP4.06□□□□□ -1.76
CPSF3-205ENST00000489629 MIER2Q8N344 545 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 DDB2Q92466 427 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 FKBP10Q96AY3 582 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 NAF1Q96HR8 494 aaKnown RBP4.06□□□□□ -1.76
CPSF3-205ENST00000489629 ACTRT3Q9BYD9 372 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 TPSD1Q9BZJ3 242 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 TINAGL1Q9GZM7 467 aaPredicted RBP4.06□□□□□ -1.76
CPSF3-205ENST00000489629 MRPL46Q9H2W6 279 aaKnown RBP4.06□□□□□ -1.76
CPSF3-205ENST00000489629 WDCPQ9H6R7 721 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 SERHLQ9NQF3 203 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 EHD3Q9NZN3 535 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 RNF7Q9UBF6 113 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 SERGEFQ9UGK8 458 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 ZDHHC8Q9ULC8 765 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 SPEF1Q9Y4P9 236 aa4.06□□□□□ -1.76
CPSF3-205ENST00000489629 LINC01548A6NM66 108 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 VPS4BO75351 444 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 LATS1O95835 1130 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 TTLL1O95922 423 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms