RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ASB6Q9NWX5 421 aa6.16□□□□□ -1.42
PTPN4-212ENST00000488896 DDX56Q9NY93 547 aaKnown RBP6.16□□□□□ -1.42
PTPN4-212ENST00000488896 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-212ENST00000488896 A0A0B4J269 797 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 MASP2O00187 686 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 MATN4O95460 622 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 TYRP14679 529 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 MAPK10P53779 464 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 EXOSC9Q06265 439 aaKnown RBP6.15□□□□□ -1.42
PTPN4-212ENST00000488896 TUBB3Q13509 450 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 HLXQ14774 488 aaPredicted RBP6.15□□□□□ -1.42
PTPN4-212ENST00000488896 KIF22Q14807 665 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 IFIT1BQ5T764 474 aaKnown RBP6.15□□□□□ -1.42
PTPN4-212ENST00000488896 POC1BQ8TC44 478 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 STAG1Q8WVM7 1258 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ZNF764Q96H86 408 aaPredicted RBP6.15□□□□□ -1.42
PTPN4-212ENST00000488896 TPSD1Q9BZJ3 242 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 KLK15Q9H2R5 256 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ARMT1Q9H993 441 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 GPR35Q9HC97 309 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ETAA1Q9NY74 926 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ST3GAL5Q9UNP4 418 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ANKRD6Q9Y2G4 727 aa6.15□□□□□ -1.42
PTPN4-212ENST00000488896 ADM5C9JUS6 153 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 MPPED1O15442 326 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 ORC4O43929 436 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 CHEK2O96017 543 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 IGLV2-14P01704 120 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 AKAP5P24588 427 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 NDUFV1P49821 464 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 CACNA2D1P54289 1103 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 ZNF267Q14586 743 aaPredicted RBP6.14□□□□□ -1.43
PTPN4-212ENST00000488896 TTF1Q15361 905 aaPredicted RBP6.14□□□□□ -1.43
PTPN4-212ENST00000488896 TMPRSS9Q7Z410 1059 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 USP37Q86T82 979 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 ZNF384Q8TF68 577 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 SLC35A4Q96G79 324 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 PGBD1Q96JS3 809 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 LRGUKQ96M69 825 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 LRFN3Q9BTN0 628 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 SPATA5L1Q9BVQ7 753 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 PCDHA6Q9UN73 950 aa6.14□□□□□ -1.43
PTPN4-212ENST00000488896 E7ENX8 843 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 PROM1O43490 865 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 TRIAP1O43715 76 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 OFD1O75665 1012 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 ALDH2P05091 517 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 RHOP08100 348 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 PDGFRBP09619 1106 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 VCAM1P19320 739 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 ITGALP20701 1170 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 ELLP55199 621 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-212ENST00000488896 MRPS21P82921 87 aaKnown RBP6.13□□□□□ -1.43
PTPN4-212ENST00000488896 TAP2Q03519 686 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 PLS1Q14651 629 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 TSTD2Q5T7W7 516 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 FAM98AQ8NCA5 519 aaKnown RBP6.13□□□□□ -1.43
PTPN4-212ENST00000488896 FAM46DQ8NEK8 389 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 NTN5Q8WTR8 489 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-212ENST00000488896 SIK2Q9H0K1 926 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 CPNE5Q9HCH3 593 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 ZNF180Q9UJW8 692 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 ZDHHC8Q9ULC8 765 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 RAD54BQ9Y620 910 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 COX11Q9Y6N1 276 aa6.13□□□□□ -1.43
PTPN4-212ENST00000488896 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 VWC2LB2RUY7 222 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 AP1G1O43747 822 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 HDCP19113 662 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 GRIA3P42263 894 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 ITIH3Q06033 890 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 TXNRD1Q16881 649 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 RBM20Q5T481 1227 aaKnown RBP6.12□□□□□ -1.43
PTPN4-212ENST00000488896 KIAA0895LQ68EN5 471 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 CAMKK1Q8N5S9 505 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 CELF5Q8N6W0 485 aaKnown RBP6.12□□□□□ -1.43
PTPN4-212ENST00000488896 BRIX1Q8TDN6 353 aaKnown RBP6.12□□□□□ -1.43
PTPN4-212ENST00000488896 HPS3Q969F9 1004 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 NUP88Q99567 741 aaPredicted RBP6.12□□□□□ -1.43
PTPN4-212ENST00000488896 CGRRF1Q99675 332 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 ACTRT3Q9BYD9 372 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 TTYH3Q9C0H2 523 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 TCF7L1Q9HCS4 588 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 SLC17A6Q9P2U8 582 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 CPA4Q9UI42 421 aa6.12□□□□□ -1.43
PTPN4-212ENST00000488896 COL11A2P13942 1736 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-212ENST00000488896 LRRC3CA6NJW4 275 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 LINC00473A8K010 186 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 ABLIM3O94929 683 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 ELFN1P0C7U0 828 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 CD38P28907 300 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 CD6P30203 668 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 KCNJ5P48544 419 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 RAB27AP51159 221 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 MCL1Q07820 350 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 PIN1Q13526 163 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-212ENST00000488896 BOP1Q14137 746 aaKnown RBP6.11□□□□□ -1.43
PTPN4-212ENST00000488896 PTPRRQ15256 657 aa6.11□□□□□ -1.43
PTPN4-212ENST00000488896 NBPF8Q3BBV2 869 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms