RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	ATXN3L	Q9H3M9	355 aa		13.44	□□□□□ -0.26
SREBF1-215	ENST00000487401	TRPV4	Q9HBA0	871 aa		13.44	□□□□□ -0.26
SREBF1-215	ENST00000487401	RBAK	Q9NYW8	714 aa	Predicted RBP	13.44	□□□□□ -0.26
SREBF1-215	ENST00000487401	HSFX1	Q9UBD0	423 aa		13.44	□□□□□ -0.26
SREBF1-215	ENST00000487401		R4GN57	208 aa		13.44	□□□□□ -0.26
SREBF1-215	ENST00000487401	CACNA1H	O95180	2353 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401		A0A087X0B3	334 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	FRMD3	A2A2Y4	597 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	GOLGA8IP	A6NC78	632 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	GOLGA8J	A6NMD2	632 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	HEPACAM2	A8MVW5	462 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	EXTL3	O43909	919 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	SOAT2	O75908	522 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	PRPF6	O94906	941 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	LMNA	P02545	664 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	HSP90AA1	P07900	732 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	CASP5	P51878	434 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	AMPD3	Q01432	767 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	ARHGAP15	Q53QZ3	475 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	VIT	Q6UXI7	678 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	TMC8	Q8IU68	726 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	MFSD6L	Q8IWD5	586 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	BRSK2	Q8IWQ3	736 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	EFCAB13	Q8IY85	973 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	DCP1B	Q8IZD4	617 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	C2orf15	Q8WU43	125 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	PSMG2	Q969U7	264 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	GCNA	Q96QF7	691 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	LRRC3	Q9BY71	257 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	TNMD	Q9H2S6	317 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	PCIF1	Q9H4Z3	704 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	ZNF334	Q9HCZ1	680 aa	Predicted RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	AGAP1	Q9UPQ3	857 aa		13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.43	□□□□□ -0.26
SREBF1-215	ENST00000487401	DPYSL4	O14531	572 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	HUS1	O60921	280 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	PPP6R2	O75170	966 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	PDIA4	P13667	645 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	TARS	P26639	723 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	POLR2B	P30876	1174 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CDR1	P51861	262 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	TSPY1	Q01534	308 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CSTF1	Q05048	431 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	HSCB	Q8IWL3	235 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CSGALNACT2	Q8N6G5	542 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	TTC9B	Q8N6N2	239 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	IQUB	Q8NA54	791 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CSGALNACT1	Q8TDX6	532 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	SNX21	Q969T3	373 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CLDN23	Q96B33	292 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	BORCS6	Q96GS4	357 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CBWD1	Q9BRT8	395 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	CUEDC2	Q9H467	287 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	TRPV5	Q9NQA5	729 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	NDRG2	Q9UN36	371 aa	Known RBP	13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	USP34	Q70CQ2	3546 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	KMT2E	Q8IZD2	1858 aa		13.42	□□□□□ -0.26
SREBF1-215	ENST00000487401	KIAA0391	O15091	583 aa	Known RBP	13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	CUTA	O60888	179 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	YEATS4	O95619	227 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	ITGB3	P05106	788 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	KRT19	P08727	400 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	GABRR2	P28476	465 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	ASIC1	P78348	528 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	RBP5	P82980	135 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	BFSP1	Q12934	665 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	GPR158	Q5T848	1215 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	LRRTM3	Q86VH5	581 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	GPIHBP1	Q8IV16	184 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	C1orf127	Q8N9H9	656 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	ZSWIM2	Q8NEG5	633 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	SPPL2B	Q8TCT7	592 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	GIPC2	Q8TF65	315 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	FAM3C	Q92520	227 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	DHX58	Q96C10	678 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	LPIN3	Q9BQK8	851 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	FGFBP2	Q9BYJ0	223 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	ABI2	Q9NYB9	513 aa	Predicted RBP	13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	FBXO4	Q9UKT5	387 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	ITGA11	Q9UKX5	1188 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	PCDHB5	Q9Y5E4	795 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	PIAS3	Q9Y6X2	628 aa		13.41	□□□□□ -0.26
SREBF1-215	ENST00000487401	C2orf16	Q68DN1	1984 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	MYO10	Q9HD67	2058 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	ZNF233	A6NK53	670 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	TMEM191B	P0C7N4	346 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	HAPLN1	P10915	354 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	CDC25C	P30307	473 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	RPS9	P46781	194 aa	Known RBP	13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	KPNA1	P52294	538 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	WNT7B	P56706	349 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	MYL7	Q01449	175 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	NFE2	Q16621	373 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	ZNF528	Q3MIS6	628 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	STXBP5	Q5T5C0	1151 aa		13.4	□□□□□ -0.26
SREBF1-215	ENST00000487401	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms