RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 POLBP06746 335 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 MRPS35P82673 323 aaKnown RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 TRIP10Q15642 601 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 CHI3L2Q15782 390 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 FAM71DQ8N9W8 422 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 EME1Q96AY2 570 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 NT5C1AQ9BXI3 368 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 TRIM54Q9BYV2 358 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 FRMD8Q9BZ67 464 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 ARHGEF38Q9NXL2 777 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 AFF4Q9UHB7 1163 aaKnown RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 PIN4Q9Y237 131 aaKnown RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 FOXN3O00409 490 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 MAFGO15525 162 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 GRAP2O75791 330 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 NLRP11P59045 1033 aaKnown RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 SLC30A9Q6PML9 568 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 METTL5Q9NRN9 209 aaKnown RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 MRGBPQ9NV56 204 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 MED24O75448 989 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 IRX1P78414 480 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 LINC00116Q8NCU8 138 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 CCDC134Q9H6E4 229 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 COG4Q9H9E3 785 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 hCG_2014768A0A024R1R8 64 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 AIM2O14862 343 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 ATPAF2Q8N5M1 289 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 SCFD1Q8WVM8 642 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CAVIN3Q969G5 261 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 AGXT2Q9BYV1 514 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 PHTF1Q9UMS5 762 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 AKAP10O43572 662 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 SRP72O76094 671 aaKnown RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 RANBP1P43487 201 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 PDK1Q15118 436 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 OR9Q1Q8NGQ5 310 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 DTNBP1Q96EV8 351 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 ASIC4Q96FT7 647 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 WHRNQ9P202 907 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CDY2AQ9Y6F7 541 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CDY1Q9Y6F8 540 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CLTCQ00610 1675 aaKnown RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 SGPL1O95470 568 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 BRD2P25440 801 aaKnown RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 VHLP40337 213 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CDC42EP1Q00587 391 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 MEI1Q5TIA1 1274 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 ATF7IP2Q5U623 682 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 SH3TC2Q8TF17 1288 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 MAGEB18Q96M61 343 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 TEX12Q9BXU0 123 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CD248Q9HCU0 757 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 ZNF70Q9UC06 446 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 DIP2AQ14689 1571 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 NTRK3Q16288 839 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 DCAF4L1Q3SXM0 396 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 MOXD1Q6UVY6 613 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 C20orf96Q9NUD7 363 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 A0A0A6YYK5 440 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 ADCY3O60266 1144 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 RARGP13631 454 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 TARSP26639 723 aaKnown RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 CTCFP49711 727 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-210ENST00000487017 PRUNE1Q86TP1 453 aa17.18■□□□□ 0.34
COL7A1-210ENST00000487017 TLR2O60603 784 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 PDAP1Q13442 181 aaKnown RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 CENPPQ6IPU0 288 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 USP33Q8TEY7 942 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 CASS4Q9NQ75 786 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 CHCHD3Q9NX63 227 aaKnown RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 ARHGAP20Q9P2F6 1191 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 C19orf81C9J6K1 198 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 NQO1P15559 274 aaKnown RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 MTM1Q13496 603 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 CUL2Q13617 745 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 SEC23AQ15436 765 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 EZH2Q15910 746 aaKnown RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 CYP4A22Q5TCH4 519 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 RDM1Q8NG50 284 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 C17orf75Q9HAS0 396 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 CEP170BQ9Y4F5 1589 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 RSPH10B2B2RC85 870 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 RSPH10BP0C881 870 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 ACADSBP45954 432 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 XRRA1Q6P2D8 792 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 SETD3Q86TU7 594 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 FAM151AQ8WW52 585 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 VPS33BQ9H267 617 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 AFF2P51816 1311 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 PTK2BQ14289 1009 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 C1orf131Q8NDD1 294 aaKnown RBP17.17■□□□□ 0.34
COL7A1-210ENST00000487017 THAP11Q96EK4 314 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 NEUROG2Q9H2A3 272 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 NRXN1Q9ULB1 1477 aa17.17■□□□□ 0.34
COL7A1-210ENST00000487017 ENO4A6NNW6 628 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 SCTRP47872 440 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 PCYOX1LQ8NBM8 494 aa17.16■□□□□ 0.34
COL7A1-210ENST00000487017 FRMD8P1Q9BZ68 369 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-210ENST00000487017 ADNPQ9H2P0 1102 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms