RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 TMEM140Q9NV12 185 aa5.98□□□□□ -1.45
VPS50-214ENST00000477935 MOCS1Q9NZB8 636 aa5.98□□□□□ -1.45
VPS50-214ENST00000477935 SAP30BPQ9UHR5 308 aaKnown RBP5.98□□□□□ -1.45
VPS50-214ENST00000477935 HS3ST3A1Q9Y663 406 aa5.98□□□□□ -1.45
VPS50-214ENST00000477935 hCG_2014768A0A024R1R8 64 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 RAP2AP10114 183 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 GDF5P43026 501 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 ODF1Q14990 250 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 ATXN7L2Q5T6C5 722 aaPredicted RBP5.97□□□□□ -1.45
VPS50-214ENST00000477935 MIGA2Q7L4E1 593 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 RHOT1Q8IXI2 618 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 ZNF276Q8N554 614 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 SLC16A11Q8NCK7 471 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 ZNF483Q8TF39 744 aaPredicted RBP5.97□□□□□ -1.45
VPS50-214ENST00000477935 IP6K1Q92551 441 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 DCLRE1CQ96SD1 692 aaKnown RBP5.97□□□□□ -1.45
VPS50-214ENST00000477935 GPRC5BQ9NZH0 403 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 REXO2Q9Y3B8 237 aaKnown RBP5.97□□□□□ -1.45
VPS50-214ENST00000477935 ACTL7AQ9Y615 435 aa5.97□□□□□ -1.45
VPS50-214ENST00000477935 POLR2AP24928 1970 aaKnown RBP5.97□□□□□ -1.45
VPS50-214ENST00000477935 AHRRA9YTQ3 701 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 RPS6KA4O75676 772 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 AMY1AP04745 511 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 NR4A1P22736 598 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 RFC4P35249 363 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 PTGS2P35354 604 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 RAP2BP61225 183 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 EXOSC10Q01780 885 aaKnown RBP5.96□□□□□ -1.46
VPS50-214ENST00000477935 KIF23Q02241 960 aaPredicted RBP5.96□□□□□ -1.46
VPS50-214ENST00000477935 NHLH2Q02577 135 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 ABHD18Q0P651 414 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 MTM1Q13496 603 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 OTUD7BQ6GQQ9 843 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 USP51Q70EK9 711 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 GDF7Q7Z4P5 450 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 ZGPATQ8N5A5 531 aaKnown RBP5.96□□□□□ -1.46
VPS50-214ENST00000477935 COA7Q96BR5 231 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 FAM193BQ96PV7 902 aaPredicted RBP5.96□□□□□ -1.46
VPS50-214ENST00000477935 ZNF768Q9H5H4 540 aaKnown RBP5.96□□□□□ -1.46
VPS50-214ENST00000477935 MMRN2Q9H8L6 949 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 TRPM5Q9NZQ8 1165 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 SLC23A1Q9UHI7 598 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 CHST2Q9Y4C5 530 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 SPEF1Q9Y4P9 236 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 IPPQ9Y573 584 aa5.96□□□□□ -1.46
VPS50-214ENST00000477935 MYBBP1AQ9BQG0 1328 aaKnown RBP5.96□□□□□ -1.46
VPS50-214ENST00000477935 DRGXA6NNA5 263 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 DIRC3C9JPN6 131 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 CYR61O00622 381 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 TEX33O43247 280 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 HTRA2O43464 458 aaPredicted RBP5.95□□□□□ -1.46
VPS50-214ENST00000477935 AKAP8O43823 692 aaKnown RBP5.95□□□□□ -1.46
VPS50-214ENST00000477935 GYS1P13807 737 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 ATP5JP18859 108 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 DDCP20711 480 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 CCND1P24385 295 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 EDNRBP24530 442 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 MCM7P33993 719 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 CHN2P52757 468 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 ANAPC15P60006 121 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 RNASE9P60153 205 aaKnown RBP5.95□□□□□ -1.46
VPS50-214ENST00000477935 FAM102AQ5T9C2 384 aaPredicted RBP5.95□□□□□ -1.46
VPS50-214ENST00000477935 DRC7Q8IY82 874 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 RAPGEF4Q8WZA2 1011 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 HDAC10Q969S8 669 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 MYOCQ99972 504 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 SERPINB13Q9UIV8 391 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 ABT1Q9ULW3 272 aaKnown RBP5.95□□□□□ -1.46
VPS50-214ENST00000477935 LIMCH1Q9UPQ0 1083 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 KIF13BQ9NQT8 1826 aa5.95□□□□□ -1.46
VPS50-214ENST00000477935 USP54Q70EL1 1684 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 ZNF185O15231 689 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 ZRANB2O95218 330 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS50-214ENST00000477935 ZSCAN20P17040 1043 aaPredicted RBP5.94□□□□□ -1.46
VPS50-214ENST00000477935 MAKP20794 623 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 IGBP1P78318 339 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 FAM189BP81408 668 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 ATP8B2P98198 1209 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 METRNLQ641Q3 311 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 SEM1Q6ZVN7 128 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 ZFPM1Q8IX07 1006 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 CNTROBQ8N137 903 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 RAB24Q969Q5 203 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 CLIP3Q96DZ5 547 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 PHACTR3Q96KR7 559 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 CAPNS2Q96L46 248 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 NEU1Q99519 415 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 SLC46A2Q9BY10 475 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 TAF1DQ9H5J8 278 aaPredicted RBP5.94□□□□□ -1.46
VPS50-214ENST00000477935 NRDE2Q9H7Z3 1164 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 SRRDQ9UH36 339 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 RUVBL1Q9Y265 456 aaKnown RBP5.94□□□□□ -1.46
VPS50-214ENST00000477935 PCDHA13Q9Y5I0 950 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 MAP3K19Q56UN5 1328 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 PCDH11XQ9BZA7 1347 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 PCDH11YQ9BZA8 1340 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 CENPJQ9HC77 1338 aaPredicted RBP5.94□□□□□ -1.46
VPS50-214ENST00000477935 NFAT5O94916 1531 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 PKD1L3Q7Z443 1732 aa5.94□□□□□ -1.46
VPS50-214ENST00000477935 CUL9Q8IWT3 2517 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms