RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 POLD3Q15054 466 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 NFIL3Q16649 462 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SPDYE2Q495Y8 402 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 BICRALQ6AI39 1079 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 HACE1Q8IYU2 909 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 TTC30BQ8N4P2 665 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 EXT2Q93063 718 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ECSITQ9BQ95 431 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SAR1AQ9NR31 198 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 COL4A3BPQ9Y5P4 624 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ABCC12Q96J65 1359 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 TK2O00142 265 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 DGKIO75912 1065 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 NPPAP01160 153 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 IL15P40933 162 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 GMFBP60983 142 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 RASA2Q15283 850 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 C12orf60Q5U649 245 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 BHLHB9Q6PI77 547 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 PLET1Q6UQ28 207 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 DHRSXQ8N5I4 330 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 FAM227BQ96M60 508 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 CALN1Q9BXU9 219 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 EML4Q9HC35 981 aaKnown RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 OLA1Q9NTK5 396 aaKnown RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 PANK4Q9NVE7 773 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 COMMD9Q9P000 198 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 EIF4G1Q04637 1599 aaKnown RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 TFECO14948 347 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ZBTB5O15062 677 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 MSH3P20585 1137 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ARF5P84085 180 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SLC29A2Q14542 456 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 PUM3Q15397 648 aaKnown RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 CARTPTQ16568 116 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ABRAXAS1Q6UWZ7 409 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 OR8H3Q8N146 312 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 TMIEQ8NEW7 156 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SKA2Q8WVK7 121 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SNX19Q92543 992 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 AKAP1Q92667 903 aaKnown RBP eCLIP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 DGCR6LQ9BY27 220 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 LRMDAQ9H2I8 198 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 INTS13Q9NVM9 706 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 MAST3O60307 1309 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SAGE2PA6NJ88 616 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 K7ERI5 159 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 IFNA14P01570 189 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ITIH2P19823 946 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 HOXC8P31273 242 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 CDK7P50613 346 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 IMPG1Q17R60 797 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 GPR107Q5VW38 600 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SLC25A41Q8N5S1 370 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 TDRD5Q8NAT2 981 aaKnown RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 PFDN5Q99471 154 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 SHCBP1LQ9BZQ2 653 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 FOXP3Q9BZS1 431 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 H2AFY2Q9P0M6 372 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 ZMYM6O95789 1325 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 MSH6P52701 1360 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 A0A0B4J269 797 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 RAD51CO43502 376 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 WFS1O76024 890 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 WARSP23381 471 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 MYL7Q01449 175 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 CHRNB3Q05901 458 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 OVGP1Q12889 678 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF211Q13398 564 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TUBB3Q13509 450 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 KHDRBS2Q5VWX1 349 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 SYDE1Q6ZW31 735 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 IFNL1Q8IU54 200 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ATXN2LQ8WWM7 1075 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ROGDIQ9GZN7 287 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TOR3AQ9H497 397 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 RERGLQ9H628 205 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 AVENQ9NQS1 362 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 MCUBQ9NWR8 336 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 RAB21Q9UL25 225 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 GIT1Q9Y2X7 761 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 UBE2QL1A1L167 161 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 E5RI56 91 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 HAT1O14929 419 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 FKBP9O95302 570 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 DBTP11182 482 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 FASP25445 335 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 PHKA1P46020 1223 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 IL5RAQ01344 420 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 DEFA5Q01523 94 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 FKBP9P1Q75LS8 142 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 SCFD1Q8WVM8 642 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TMEM237Q96Q45 408 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 CDH19Q9H159 772 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 PABPC3Q9H361 631 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 PRDM5Q9NQX1 630 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 CEP72Q9P209 647 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 RAPGEFL1Q9UHV5 662 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 EVLQ9UI08 416 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ANAPC7Q9UJX3 599 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms