RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MMRN1Q13201 1228 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 TMEM132DQ14C87 1099 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 RAB6CQ53S08 254 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 MPZL3Q6UWV2 235 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 CCDC13Q8IYE1 715 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ZBED8Q8IZ13 594 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 C4orf33Q8N1A6 199 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 RDM1Q8NG50 284 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 FEZF2Q8TBJ5 459 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 RAPGEF5Q92565 580 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 TWNKQ96RR1 684 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ACO2Q99798 780 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 RAB6CQ9H0N0 254 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 INTS9Q9NV88 658 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 HESX1Q9UBX0 185 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 ZNF112Q9UJU3 913 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 PNMA3Q9UL41 463 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 DNPEPQ9ULA0 475 aa14.53□□□□□ -0.08
CCDC88A-211ENST00000471947 MYO7AQ13402 2215 aa14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 CREB1P16220 341 aa14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 OAZ1P54368 228 aa14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 SGSM1Q2NKQ1 1148 aa14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 ZNF354CQ86Y25 554 aa14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 ELAC2Q9BQ52 826 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 SLITRK6Q9H5Y7 841 aa14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 MAP3K20Q9NYL2 800 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-211ENST00000471947 MYO1CO00159 1063 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 PGK1P00558 417 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 PDGFRAP16234 1089 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 CHRNA3P32297 505 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 CACNB2Q08289 660 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 NPNTQ6UXI9 565 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 GLIS1Q8NBF1 620 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 ADAM32Q8TC27 787 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 C17orf75Q9HAS0 396 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 CDHR5Q9HBB8 845 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 GBA2Q9HCG7 927 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 P4HA2O15460 535 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 MAFO75444 373 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 SLC25A27O95847 323 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 RFC5P40937 340 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 YWHAGP61981 247 aaKnown RBP eCLIP14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 TNFAIP2Q03169 654 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 NME3Q13232 169 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 DARS2Q6PI48 645 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 ZC3H3Q8IXZ2 948 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 TIPINQ9BVW5 301 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 GINM1Q9NU53 330 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 PARVAQ9NVD7 372 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 CAPN7Q9Y6W3 813 aa14.52□□□□□ -0.09
CCDC88A-211ENST00000471947 TULP2O00295 520 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 CD48P09326 243 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 NDST1P52848 882 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 PTENP60484 403 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 MAP3K10Q02779 954 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 MAMLD1Q13495 774 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 FAM133BQ5BKY9 247 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 NME8Q8N427 588 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 FAM71DQ8N9W8 422 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 RNF34Q969K3 372 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 SPDYE5A6NIY4 337 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 ASB14A6NK59 587 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 ARL2P36404 184 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 ARPP19P56211 112 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 GNASQ5JWF2 1037 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 ZNF662Q6ZS27 426 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 TMC3Q7Z5M5 1100 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 CTU1Q7Z7A3 348 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 BRSK2Q8IWQ3 736 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 SENP7Q9BQF6 1050 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 UVRAGQ9P2Y5 699 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 TNPO2O14787 897 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 GZMAP12544 262 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 TBXAS1P24557 533 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 LSP1P33241 339 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 MTMR3Q13615 1198 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 GRIK4Q16099 956 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 CCNYQ8ND76 341 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 NXF3Q9H4D5 531 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 NMRK2Q9NPI5 230 aa14.51□□□□□ -0.09
CCDC88A-211ENST00000471947 CREB3O43889 395 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 STBD1O95210 358 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 HOXA7P31268 230 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 NOMO3P69849 1222 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 ARFGAP2Q8N6H7 521 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 DHX35Q9H5Z1 703 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 MROH7Q68CQ1 1323 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 RFX1P22670 979 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 PDIA2Q13087 525 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 KDELC2Q7Z4H8 507 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 PRMT1Q99873 361 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 EIF2AQ9BY44 585 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 CDC42EP4Q9H3Q1 356 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 DPP3Q9NY33 737 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 MSCO60682 206 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 CHN1P15882 459 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 GCNT1Q02742 428 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 HADHQ16836 314 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 BRI3BPQ8WY22 251 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 ARHGEF2Q92974 986 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms