RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MORF4L2Q15014 288 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 FAM98CQ17RN3 349 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 ARCQ7LC44 396 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 TXNRD3Q86VQ6 643 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 EPS8L3Q8TE67 593 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 JADE3Q92613 823 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 GLG1Q92896 1179 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 RBM17Q96I25 401 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 PRDM16Q9HAZ2 1276 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 GPCPD1Q9NPB8 672 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 RASAL2Q9UJF2 1139 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 NIP7Q9Y221 180 aaKnown RBP eCLIP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SNX24Q9Y343 169 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 TCRBV7S2A1N4TA0A589 114 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 IPO5O00410 1097 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 CHMP2AO43633 222 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 MYBL1P10243 752 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 BRAFP15056 766 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 STIP1P31948 543 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 ADCY7P51828 1080 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 MSLNQ13421 630 aaPredicted RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 INTS8Q75QN2 995 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 MAP4K3Q8IVH8 894 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SLFN12Q8IYM2 578 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 TRPC4APQ8TEL6 797 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SNX29Q8TEQ0 813 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 AFG1LQ8WV93 481 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 RABEP2Q9H5N1 569 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SARDHQ9UL12 918 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 PNMA3Q9UL41 463 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 ZNRF3Q9ULT6 936 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 CYP2D7A0A087X1C5 515 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 HMX2A2RU54 273 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 POTEMA6NI47 508 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 ARSEP51690 589 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 GUCY2FP51841 1108 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 BFSP1Q12934 665 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 SYDE2Q5VT97 1194 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 RINT1Q6NUQ1 792 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 HHIPL2Q6UWX4 724 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 NET1Q7Z628 596 aaPredicted RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 BTBD10Q9BSF8 475 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 THAP2Q9H0W7 228 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 PCDH18Q9HCL0 1135 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 IKBKGQ9Y6K9 419 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 SKIP12755 728 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 CD97P48960 835 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 STX3Q13277 289 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 CCDC137Q6PK04 289 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 TREML1Q86YW5 311 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 MCUQ8NE86 351 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 DGCR14Q96DF8 476 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 ELAC2Q9BQ52 826 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 MAK16Q9BXY0 300 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 MIS12Q9H081 205 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 C10orf88Q9H8K7 445 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 PCDH9Q9HC56 1237 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 SIPA1L1O43166 1804 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 ITGB4P16144 1822 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 IQCA1LA6NCM1 817 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM191CA6NGB0 347 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 M0QZ92 97 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 GH1P01241 217 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 PRKCGP05129 697 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM191BP0C7N4 346 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 C7P10643 843 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 ITPK1Q13572 414 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 CATSPER3Q86XQ3 398 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 CELF1Q92879 486 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 LSM14BQ9BX40 385 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 ZC3H12CQ9C0D7 883 aaKnown RBP5.65□□□□□ -1.51
SYNE1-220ENST00000471834 KCNK9Q9NPC2 374 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 ATP8A1Q9Y2Q0 1164 aa5.65□□□□□ -1.51
SYNE1-220ENST00000471834 THSD7AQ9UPZ6 1657 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 GNAT1P11488 350 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 MTTPP55157 894 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TUBA4AP68366 448 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 C1QBPQ07021 282 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ZACNQ401N2 412 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CBWD6Q4V339 395 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CBWD3Q5JTY5 395 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CBWD5Q5RIA9 395 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CLEC14AQ86T13 490 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 RASGRP4Q8TDF6 673 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 FAF2Q96CS3 445 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CNDP1Q96KN2 507 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF641Q96N77 438 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 DDX23Q9BUQ8 820 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 UTP11Q9Y3A2 253 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 SNAP23O00161 211 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 FOXN3O00409 490 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TRAF5O00463 557 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ITGBL1O95965 494 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CDH2P19022 906 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 COMTP21964 271 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 RPL5P46777 297 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TEX44Q53QW1 395 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 C8orf82Q6P1X6 216 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 STXBP4Q6ZWJ1 553 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms