RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ZBTB6Q15916 424 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 SNRNP35Q16560 246 aaKnown RBP19.12■□□□□ 0.65
COL7A1-205ENST00000465238 PABPC1LQ4VXU2 614 aaKnown RBP19.12■□□□□ 0.65
COL7A1-205ENST00000465238 VARS2Q5ST30 1063 aaKnown RBP19.12■□□□□ 0.65
COL7A1-205ENST00000465238 PARM1Q6UWI2 310 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 SLC9A9Q8IVB4 645 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 ADSSL1Q8N142 457 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 BEST2Q8NFU1 509 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 ITFG1Q8TB96 612 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 TSG101Q99816 390 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 DNMT3BQ9UBC3 853 aaKnown RBP19.12■□□□□ 0.65
COL7A1-205ENST00000465238 TUBGCP4Q9UGJ1 667 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 C2CD2Q9Y426 696 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 NUB1Q9Y5A7 615 aa19.12■□□□□ 0.65
COL7A1-205ENST00000465238 PRR23AA6NEV1 266 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 H7C4K7 107 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 PSMA7O14818 248 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 NFICP08651 508 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 ROR1Q01973 937 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 ASCL5Q7RTU5 278 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 FRMD5Q7Z6J6 570 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 NT5DC4Q86YG4 428 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 ST13P5Q8NFI4 369 aaPredicted RBP19.11■□□□□ 0.65
COL7A1-205ENST00000465238 CACTINQ8WUQ7 758 aaKnown RBP19.11■□□□□ 0.65
COL7A1-205ENST00000465238 TMEM174Q8WUU8 243 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 NKD2Q969F2 451 aaPredicted RBP19.11■□□□□ 0.65
COL7A1-205ENST00000465238 DHTKD1Q96HY7 919 aaPredicted RBP19.11■□□□□ 0.65
COL7A1-205ENST00000465238 SHDQ96IW2 340 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 RPP25Q9BUL9 199 aaKnown RBP19.11■□□□□ 0.65
COL7A1-205ENST00000465238 PDE11AQ9HCR9 933 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 DMAC2Q9NW81 257 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 HCFC1R1Q9NWW0 138 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 FRMD4BQ9Y2L6 1034 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 SPTBN4Q9H254 2564 aa19.11■□□□□ 0.65
COL7A1-205ENST00000465238 ARHGEF37A1IGU5 675 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 ABLIM3O94929 683 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 NR2F2P24468 414 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 ELF1P32519 619 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 GPC5P78333 572 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 ADAM9Q13443 819 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 NFIL3Q16649 462 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 SPATA1Q5VX52 437 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 CEP135Q66GS9 1140 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 CENPPQ6IPU0 288 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 NPAS3Q8IXF0 933 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 SUSD3Q96L08 255 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 AVENQ9NQS1 362 aaPredicted RBP19.1■□□□□ 0.65
COL7A1-205ENST00000465238 MRPS23Q9Y3D9 190 aaKnown RBP19.1■□□□□ 0.65
COL7A1-205ENST00000465238 SIT1Q9Y3P8 196 aa19.1■□□□□ 0.65
COL7A1-205ENST00000465238 WDR27A2RRH5 827 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 PRRG1O14668 218 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 TBC1D4O60343 1298 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 LRG1P02750 347 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 ATF2P15336 505 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 BMP6P22004 513 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 LRPAP1P30533 357 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 STARD6P59095 220 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 TFAMQ00059 246 aaKnown RBP19.09■□□□□ 0.65
COL7A1-205ENST00000465238 CYP24A1Q07973 514 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 MRPL58Q14197 206 aaKnown RBP19.09■□□□□ 0.65
COL7A1-205ENST00000465238 EDRF1Q3B7T1 1238 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 KLHL10Q6JEL2 608 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 FNBP1Q96RU3 617 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 DPP3Q9NY33 737 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 GVINP1Q7Z2Y8 2422 aa19.09■□□□□ 0.65
COL7A1-205ENST00000465238 PPP1R3GB7ZBB8 358 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 RHOP08100 348 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 CD44P16070 742 aaKnown RBP19.08■□□□□ 0.64
COL7A1-205ENST00000465238 PTPN2P17706 415 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 PTMSP20962 102 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 CCNE1P24864 410 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 GUCY2FP51841 1108 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 WNT7BP56706 349 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 PFKPQ01813 784 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 LRRC63Q05C16 580 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 PSMD6Q15008 389 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 ZCWPW2Q504Y3 356 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 TPGS2Q68CL5 300 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 ANKRD40Q6AI12 368 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 EFCAB13Q8IY85 973 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 TCEAL8Q8IYN2 117 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 APPL2Q8NEU8 664 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 CCDC127Q96BQ5 260 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 GDE1Q9NZC3 331 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 FBXL5Q9UKA1 691 aa19.08■□□□□ 0.64
COL7A1-205ENST00000465238 CETN3O15182 167 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 TNNC2P02585 160 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 TMEM191BP0C7N4 346 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 DLATP10515 647 aaKnown RBP19.07■□□□□ 0.64
COL7A1-205ENST00000465238 TNNI1P19237 187 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 CASP4P49662 377 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 ARPP19P56211 112 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 PRKCQQ04759 706 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 DUOXA2Q1HG44 320 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 CTXN3Q4LDR2 81 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 ZNF280DQ6N043 979 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 PJA1Q8NG27 643 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 NELFBQ8WX92 580 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 ING5Q8WYH8 240 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 ANKRD36BP1Q96IX9 119 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms