RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 RSPO4Q2I0M5 234 aaPredicted RBP16.64■□□□□ 0.25
SKA3-204ENST00000462482 DCP1BQ8IZD4 617 aaKnown RBP16.64■□□□□ 0.25
SKA3-204ENST00000462482 C2orf15Q8WU43 125 aaKnown RBP16.64■□□□□ 0.25
SKA3-204ENST00000462482 POMGNT1Q8WZA1 660 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 HVCN1Q96D96 273 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 PYM1Q9BRP8 204 aaKnown RBP16.64■□□□□ 0.25
SKA3-204ENST00000462482 LRRC3Q9BY71 257 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 CCSER1Q9C0I3 900 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 CRISPLD1Q9H336 500 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 ST6GALNAC4Q9H4F1 302 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 DPP3Q9NY33 737 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 OBP2AQ9NY56 170 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 ZMYM5Q9UJ78 669 aa16.64■□□□□ 0.25
SKA3-204ENST00000462482 ANO9A1A5B4 782 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 SHISA7A6NL88 538 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 SLC38A8A6NNN8 435 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 ANKRD63C9JTQ0 380 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 NRG2O14511 850 aaPredicted RBP16.63■□□□□ 0.25
SKA3-204ENST00000462482 IL18RAPO95256 599 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 PLCB2Q00722 1185 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 FCHO2Q0JRZ9 810 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 SV2CQ496J9 727 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 ZC2HC1CQ53FD0 456 aaPredicted RBP16.63■□□□□ 0.25
SKA3-204ENST00000462482 DGKKQ5KSL6 1271 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 SLC39A4Q6P5W5 647 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 RALGPS2Q86X27 583 aaPredicted RBP16.63■□□□□ 0.25
SKA3-204ENST00000462482 SPEM1Q8N4L4 309 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 CELF5Q8N6W0 485 aaKnown RBP16.63■□□□□ 0.25
SKA3-204ENST00000462482 SPPL2BQ8TCT7 592 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 ZNF560Q96MR9 790 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 TMEM209Q96SK2 561 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 ZCWPW1Q9H0M4 648 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 TASP1Q9H6P5 420 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 DLL3Q9NYJ7 618 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 SEL1LQ9UBV2 794 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 STK17AQ9UEE5 414 aa16.63■□□□□ 0.25
SKA3-204ENST00000462482 SOAT2O75908 522 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 CHRNB1P11230 501 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 GAP43P17677 238 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 PNPLA4P41247 253 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 TSPY1Q01534 308 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 STXBP5Q5T5C0 1151 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 PRR23BQ6ZRT6 265 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 GAREM2Q75VX8 874 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 DYMQ7RTS9 669 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 NT5DC4Q86YG4 428 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 GPIHBP1Q8IV16 184 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 ZNF687Q8N1G0 1237 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 BPIFB1Q8TDL5 484 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 MRPL44Q9H9J2 332 aaKnown RBP16.62■□□□□ 0.25
SKA3-204ENST00000462482 CDV3Q9UKY7 258 aaKnown RBP16.62■□□□□ 0.25
SKA3-204ENST00000462482 R3HCC1Q9Y3T6 440 aaKnown RBP16.62■□□□□ 0.25
SKA3-204ENST00000462482 EP300Q09472 2414 aaPredicted RBP16.62■□□□□ 0.25
SKA3-204ENST00000462482 MYH15Q9Y2K3 1946 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 SPTBN4Q9H254 2564 aa16.62■□□□□ 0.25
SKA3-204ENST00000462482 KPNA7A9QM74 516 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 SPECC1L-ADORA2AF8WAN1 911 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 ARNTLO00327 626 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 CD2BP2O95400 341 aaKnown RBP16.61■□□□□ 0.25
SKA3-204ENST00000462482 GRIN1Q05586 938 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 RRAGBQ5VZM2 374 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 LAIR1Q6GTX8 287 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 SV2BQ7L1I2 683 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 ZNF720Q7Z2F6 126 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 SFR1Q86XK3 245 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 TTC9BQ8N6N2 239 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 OR10T2Q8NGX3 314 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 LRRC15Q8TF66 581 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 CACTINQ8WUQ7 758 aaKnown RBP16.61■□□□□ 0.25
SKA3-204ENST00000462482 RSPRY1Q96DX4 576 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 ACCSQ96QU6 501 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 FIZ1Q96SL8 496 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 LPIN3Q9BQK8 851 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 ABI2Q9NYB9 513 aaPredicted RBP16.61■□□□□ 0.25
SKA3-204ENST00000462482 PCDHB5Q9Y5E4 795 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 PCDHB13Q9Y5F0 798 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 STYXL1Q9Y6J8 313 aa16.61■□□□□ 0.25
SKA3-204ENST00000462482 COL4A3Q01955 1670 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 MYBPHLA2RUH7 354 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 LDHAP00338 332 aaKnown RBP16.6■□□□□ 0.25
SKA3-204ENST00000462482 WEE1P30291 646 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 CTHP32929 405 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 CNR2P34972 360 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 AVPR1AP37288 418 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 SOX9P48436 509 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 CYP4F8P98187 520 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 TFAMQ00059 246 aaKnown RBP16.6■□□□□ 0.25
SKA3-204ENST00000462482 SATB1Q01826 763 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 WSCD1Q658N2 575 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 SYCP3Q8IZU3 236 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 SYNPOQ8N3V7 929 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 TTC8Q8TAM2 541 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 GIPC2Q8TF65 315 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 EPSTI1Q96J88 318 aa16.6■□□□□ 0.25
SKA3-204ENST00000462482 MED19A0JLT2 244 aaPredicted RBP16.59■□□□□ 0.25
SKA3-204ENST00000462482 TISP43B9A030 160 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 HUS1O60921 280 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 GCNT3O95395 438 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 DDX6P26196 483 aaKnown RBP eCLIP16.59■□□□□ 0.25
SKA3-204ENST00000462482 AMPD2Q01433 879 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms