RNA–Protein interactions for RNA: ENST00000462135.1

STX1A-206, Transcript of syntaxin 1A, human

TSL 3

Gene STX1A, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
STX1A-206	ENST00000462135		M0QZQ0	153 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	GABRD	O14764	452 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	SPTLC1	O15269	473 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	THAP12	O43422	761 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	POMC	P01189	267 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CYP11A1	P05108	521 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	MME	P08473	750 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	UNG	P13051	313 aa	Predicted RBP	12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	LHX1	P48742	406 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CLCNKB	P51801	687 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	AFF1	P51825	1210 aa	Known RBP	12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CENPC	Q03188	943 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CNGA2	Q16280	664 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	ACAD10	Q6JQN1	1059 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	SLC4A11	Q8NBS3	891 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	ELMO3	Q96BJ8	720 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	TRIM43	Q96BQ3	446 aa	Predicted RBP	12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	VWCE	Q96DN2	955 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	TNIP3	Q96KP6	325 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	ELOVL4	Q9GZR5	314 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	GOLGA2P5	Q9HBQ8	144 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	TBC1D13	Q9NVG8	400 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	L1RE1	Q9UN81	338 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	INPP5F	Q9Y2H2	1132 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CEP83	Q9Y592	693 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	BRCA2	P51587	3418 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	NCAN	O14594	1321 aa		12.8	□□□□□ -0.36
STX1A-206	ENST00000462135	CYB561D2	O14569	222 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	TRAPPC3	O43617	180 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	AMH	P03971	560 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	ODC1	P11926	461 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	EN2	P19622	333 aa	Predicted RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	TYMP	P19971	482 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	RAP1GAP	P47736	663 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	NDST1	P52848	882 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	HADHB	P55084	474 aa	Known RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	CDH8	P55286	799 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	PPIG	Q13427	754 aa	Known RBP eCLIP	12.79	□□□□□ -0.36	9e-6	■■□□□ 12.8
STX1A-206	ENST00000462135	TCTN1	Q2MV58	587 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	SGO2	Q562F6	1265 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	ARHGAP17	Q68EM7	881 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	LCLAT1	Q6UWP7	414 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	DEFB128	Q7Z7B8	93 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	PHF13	Q86YI8	300 aa	Predicted RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	RHOT2	Q8IXI1	618 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	COLGALT2	Q8IYK4	626 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	ADGRF2	Q8IZF7	708 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	LRRC43	Q8N309	656 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	PDCL2	Q8N4E4	241 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	TMEM35B	Q8NCS4	154 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	TRIM58	Q8NG06	486 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	KBTBD7	Q8WVZ9	684 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	SECISBP2L	Q93073	1101 aa	Known RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	SUSD3	Q96L08	255 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	SENP8	Q96LD8	212 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	CASD1	Q96PB1	797 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	FAM193B	Q96PV7	902 aa	Predicted RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	PCDHB18P	Q96TA0	734 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	MRPL45	Q9BRJ2	306 aa	Known RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	LACRT	Q9GZZ8	138 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	PDCL3	Q9H2J4	239 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	SNX25	Q9H3E2	840 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	IL23A	Q9NPF7	189 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	LZTFL1	Q9NQ48	299 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	AVEN	Q9NQS1	362 aa	Predicted RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	SEPT11	Q9NVA2	429 aa	Known RBP	12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	PRKAG2	Q9UGJ0	569 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	GTF3C4	Q9UKN8	822 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	STXBP5L	Q9Y2K9	1186 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	TTC3	P53804	2025 aa		12.79	□□□□□ -0.36
STX1A-206	ENST00000462135	TRIP11	Q15643	1979 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	RCCD1	A6NED2	376 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	CASTOR2	A6NHX0	329 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135		O00370	1275 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	B3GAT3	O94766	335 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	MTA2	O94776	668 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	KIF4A	O95239	1232 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	FTL	P02792	175 aa	Predicted RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	SETSIP	P0DME0	302 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	FGFR1	P11362	822 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	TNNT1	P13805	278 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	PCSK1	P29120	753 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	GNL1	P36915	607 aa	Predicted RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	NSF	P46459	744 aa	Known RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	GALC	P54803	685 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	NOMO3	P69849	1222 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	GPC5	P78333	572 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	RNASEL	Q05823	741 aa	Known RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	C1QBP	Q07021	282 aa	Known RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	ELAVL2	Q12926	359 aa	Known RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	TAF3	Q5VWG9	929 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	PALB2	Q86YC2	1186 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	GPIHBP1	Q8IV16	184 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	MSANTD4	Q8NCY6	345 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	RFFL	Q8WZ73	363 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	C16orf45	Q96MC5	204 aa	Predicted RBP	12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	NOX5	Q96PH1	765 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	HTATIP2	Q9BUP3	242 aa		12.78	□□□□□ -0.36
STX1A-206	ENST00000462135	MIS12	Q9H081	205 aa		12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms