RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 IMPG2Q9BZV3 1241 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 TMEM63CQ9P1W3 806 aa24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 NXF1Q9UBU9 619 aaKnown RBP24.52■■□□□ 1.52
CCDC28B-203ENST00000461819 MBTPS2O43462 519 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 GNA14O95837 355 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 HLA-DRAP01903 254 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 OR4Q2P0C623 313 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 ELF1P32519 619 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 ITIH3Q06033 890 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 SOWAHAQ2M3V2 549 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 ZNF667Q5HYK9 610 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 TJAP1Q5JTD0 557 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 TPGS2Q68CL5 300 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 KRT39Q6A163 491 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 XYLT2Q9H1B5 865 aa24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 USP15Q9Y4E8 981 aaPredicted RBP24.51■■□□□ 1.51
CCDC28B-203ENST00000461819 GRXCR2A6NFK2 248 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 C8AP07357 584 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 MYL7Q01449 175 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 SGSM1Q2NKQ1 1148 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 PPM1LQ5SGD2 360 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 DPH6Q7L8W6 267 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 OR10T2Q8NGX3 314 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 SLC7A14Q8TBB6 771 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 SPATA18Q8TC71 538 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 S1PR5Q9H228 398 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 ADAM7Q9H2U9 754 aa24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 DDX43Q9NXZ2 648 aaKnown RBP24.5■■□□□ 1.51
CCDC28B-203ENST00000461819 PRRG1O14668 218 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 RFPL2O75678 378 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 ABLIM3O94929 683 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 CCDC192P0DO97 292 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 P4HA1P13674 534 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 ERCC5P28715 1186 aaPredicted RBP24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 LHX1P48742 406 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 MCCD1P59942 119 aaPredicted RBP24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 TSPY1Q01534 308 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 STX1AQ16623 288 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 CCDC149Q6ZUS6 474 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 CCDC150Q8NCX0 1101 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 TAS1R2Q8TE23 839 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 TAF4BQ92750 862 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 SLC35C1Q96A29 364 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 PGLYRP2Q96PD5 576 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 TMEM209Q96SK2 561 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 RTP3Q9BQQ7 232 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 VRTNQ9H8Y1 702 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 CYP4F11Q9HBI6 524 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 ZDHHC7Q9NXF8 308 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 AFF4Q9UHB7 1163 aaKnown RBP24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 POLIQ9UNA4 740 aa24.49■■□□□ 1.51
CCDC28B-203ENST00000461819 CCDC195A0A1B0GUA6 201 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 ZMYND10O75800 440 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 IL9P15248 144 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 ATF2P15336 505 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 ADCY1Q08828 1119 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 GPR17Q13304 367 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 KLHL40Q2TBA0 621 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 SLC39A12Q504Y0 691 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 SCARA5Q6ZMJ2 495 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 RNF19BQ6ZMZ0 732 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 CREBRFQ8IUR6 639 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 ELMO3Q96BJ8 720 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 RIPOR3Q96MK2 946 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 MED15Q96RN5 788 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 ZCWPW1Q9H0M4 648 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 SNX25Q9H3E2 840 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.48■■□□□ 1.517e-11■■■■■ 260.8
CCDC28B-203ENST00000461819 ANO10Q9NW15 660 aa24.48■■□□□ 1.51
CCDC28B-203ENST00000461819 ASS1P00966 412 aaKnown RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 WEE2P0C1S8 567 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 BMP1P13497 986 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 ACAT1P24752 427 aaKnown RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 PCSK1P29120 753 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 CBX2Q14781 532 aaPredicted RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 SMAD2Q15796 467 aaKnown RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 CT47A1Q5JQC4 288 aaPredicted RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 LIMS2Q7Z4I7 341 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 OSTM1Q86WC4 334 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 DCP1BQ8IZD4 617 aaKnown RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 FBXL13Q8NEE6 735 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 CMASQ8NFW8 434 aaPredicted RBP24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 KBTBD7Q8WVZ9 684 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 PI4K2AQ9BTU6 479 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 PIDD1Q9HB75 910 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 CDH22Q9UJ99 828 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 C5orf42Q9H799 3197 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 DENND4AQ7Z401 1863 aa24.47■■□□□ 1.51
CCDC28B-203ENST00000461819 WARSP23381 471 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 MTHFRP42898 656 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 MARSP56192 900 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 NOP14P78316 857 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 UVSSAQ2YD98 709 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 CBWD6Q4V339 395 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 CBWD3Q5JTY5 395 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 CBWD5Q5RIA9 395 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 ATAT1Q5SQI0 421 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 SPOPLQ6IQ16 392 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 GPR149Q86SP6 731 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 TCEAL8Q8IYN2 117 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms