RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 IMPG2Q9BZV3 1241 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 ZMAT3Q9HA38 289 aaKnown RBP5.02□□□□□ -1.61
USP40-209ENST00000452724 RSAD1Q9HA92 442 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.02□□□□□ -1.61
USP40-209ENST00000452724 SYBUQ9NX95 663 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 TESQ9UGI8 421 aaKnown RBP5.02□□□□□ -1.61
USP40-209ENST00000452724 USP25Q9UHP3 1055 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 CDYLQ9Y232 598 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 AATKQ6ZMQ8 1374 aa5.02□□□□□ -1.61
USP40-209ENST00000452724 A0A1W2PPL8 197 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 CCDC78A2IDD5 438 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 MARCH11A6NNE9 402 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 KIAA0355O15063 1070 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 GPANK1O95872 356 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 GNAI2P04899 355 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 CFIP05156 583 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 RHCEP18577 417 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 HDCP19113 662 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 FBLP22087 321 aaKnown RBP5.01□□□□□ -1.61
USP40-209ENST00000452724 GNALP38405 381 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 ZNF135P52742 658 aaPredicted RBP5.01□□□□□ -1.61
USP40-209ENST00000452724 SOX8P57073 446 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 HSD11B2P80365 405 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 RHDQ02161 417 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 TP53BP2Q13625 1128 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 CNN3Q15417 329 aaKnown RBP5.01□□□□□ -1.61
USP40-209ENST00000452724 CYB5RLQ6IPT4 315 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 PPP4R4Q6NUP7 873 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 SWSAP1Q6NVH7 229 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 FOXR2Q6PJQ5 311 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 COL23A1Q86Y22 540 aaPredicted RBP5.01□□□□□ -1.61
USP40-209ENST00000452724 ADGRG3Q86Y34 549 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 PDPRQ8NCN5 879 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 LINC00476Q8WZB0 136 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 NELL1Q92832 810 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 TTC17Q96AE7 1141 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 MRGPRX1Q96LB2 322 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 ATP6V0A4Q9HBG4 840 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 GPR35Q9HC97 309 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 HSFX1Q9UBD0 423 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 MAP3K2Q9Y2U5 619 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 INSL6Q9Y581 213 aa5.01□□□□□ -1.61
USP40-209ENST00000452724 CFAP69A5D8W1 941 aa5□□□□□ -1.61
USP40-209ENST00000452724 E9PLN8 166 aa5□□□□□ -1.61
USP40-209ENST00000452724 PHGDHO43175 533 aaKnown RBP5□□□□□ -1.61
USP40-209ENST00000452724 PRC1O43663 620 aa5□□□□□ -1.61
USP40-209ENST00000452724 SPDEFO95238 335 aa5□□□□□ -1.61
USP40-209ENST00000452724 CHEK2O96017 543 aa5□□□□□ -1.61
USP40-209ENST00000452724 ELANEP08246 267 aa5□□□□□ -1.61
USP40-209ENST00000452724 ITGAMP11215 1152 aa5□□□□□ -1.61
USP40-209ENST00000452724 NPR1P16066 1061 aa5□□□□□ -1.61
USP40-209ENST00000452724 CD38P28907 300 aa5□□□□□ -1.61
USP40-209ENST00000452724 KCNJ5P48544 419 aa5□□□□□ -1.61
USP40-209ENST00000452724 SEC24CP53992 1094 aa5□□□□□ -1.61
USP40-209ENST00000452724 CACNB3P54284 484 aa5□□□□□ -1.61
USP40-209ENST00000452724 FAM193AP78312 1265 aa5□□□□□ -1.61
USP40-209ENST00000452724 PIGFQ07326 219 aa5□□□□□ -1.61
USP40-209ENST00000452724 ZNF844Q08AG5 666 aa5□□□□□ -1.61
USP40-209ENST00000452724 MPP3Q13368 585 aa5□□□□□ -1.61
USP40-209ENST00000452724 HLTFQ14527 1009 aaKnown RBP eCLIP5□□□□□ -1.61
USP40-209ENST00000452724 KIAA0753Q2KHM9 967 aa5□□□□□ -1.61
USP40-209ENST00000452724 RNF220Q5VTB9 566 aa5□□□□□ -1.61
USP40-209ENST00000452724 DARS2Q6PI48 645 aaKnown RBP5□□□□□ -1.61
USP40-209ENST00000452724 SYCE2Q6PIF2 218 aa5□□□□□ -1.61
USP40-209ENST00000452724 FAM43AQ8N2R8 423 aa5□□□□□ -1.61
USP40-209ENST00000452724 TMEM132CQ8N3T6 1108 aa5□□□□□ -1.61
USP40-209ENST00000452724 PCSK9Q8NBP7 692 aaKnown RBP5□□□□□ -1.61
USP40-209ENST00000452724 DDX17Q92841 729 aaKnown RBP5□□□□□ -1.61
USP40-209ENST00000452724 MED15Q96RN5 788 aa5□□□□□ -1.61
USP40-209ENST00000452724 ADAM2Q99965 735 aa5□□□□□ -1.61
USP40-209ENST00000452724 VKORC1Q9BQB6 163 aa5□□□□□ -1.61
USP40-209ENST00000452724 TINAGL1Q9GZM7 467 aaPredicted RBP5□□□□□ -1.61
USP40-209ENST00000452724 PIH1D1Q9NWS0 290 aaKnown RBP5□□□□□ -1.61
USP40-209ENST00000452724 KCNE5Q9UJ90 142 aa5□□□□□ -1.61
USP40-209ENST00000452724 MTO1Q9Y2Z2 717 aaKnown RBP5□□□□□ -1.61
USP40-209ENST00000452724 EPN1Q9Y6I3 576 aaPredicted RBP5□□□□□ -1.61
USP40-209ENST00000452724 GOLIM4O00461 696 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 ERN1O75460 977 aaKnown RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 ESRRBO95718 433 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 KITP10721 976 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 EGR2P11161 476 aaPredicted RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 FDXRP22570 491 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 CXCR5P32302 372 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 TBX4P57082 545 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 MRPS21P82921 87 aaKnown RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 HABP2Q14520 560 aaPredicted RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 CCDC142Q17RM4 750 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 B3GNTL1Q67FW5 361 aaPredicted RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 APOA5Q6Q788 366 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 CFAP52Q8N1V2 620 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 IL31RAQ8NI17 732 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 ASB10Q8WXI3 467 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 LRTOMTQ8WZ04 291 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 VOPP1Q96AW1 172 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 ZNF764Q96H86 408 aaPredicted RBP4.99□□□□□ -1.61
USP40-209ENST00000452724 CNPPD1Q9BV87 410 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 ALOXE3Q9BYJ1 711 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 C22orf23Q9BZE7 217 aa4.99□□□□□ -1.61
USP40-209ENST00000452724 SIK2Q9H0K1 926 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms