RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 UPF2Q9HAU5 1272 aaKnown RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 CPSF3Q9UKF6 684 aaKnown RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 SMC3Q9UQE7 1217 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.39□□□□□ -0.11
HMGB3-204ENST00000448905 FANCMQ8IYD8 2048 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 MIA3Q5JRA6 1907 aa14.39□□□□□ -0.11
HMGB3-204ENST00000448905 MYBPHLA2RUH7 354 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 SLC38A8A6NNN8 435 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 SPECC1L-ADORA2AF8WAN1 911 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 ARNTLO00327 626 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 PIRO00625 290 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 NRG2O14511 850 aaPredicted RBP14.38□□□□□ -0.11
HMGB3-204ENST00000448905 CYB561D2O14569 222 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 CYP11A1P05108 521 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 ZNF131P52739 623 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 GTF2BQ00403 316 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 SLC39A12Q504Y0 691 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 LARP1BQ659C4 914 aaKnown RBP14.38□□□□□ -0.11
HMGB3-204ENST00000448905 GAREM2Q75VX8 874 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 LONP2Q86WA8 852 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 GPIHBP1Q8IV16 184 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 BPIFB1Q8TDL5 484 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 EXOC4Q96A65 974 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 DNAJC25Q9H1X3 360 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 C2CD2Q9Y426 696 aa14.38□□□□□ -0.11
HMGB3-204ENST00000448905 NOTCH4Q99466 2003 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 ANO9A1A5B4 782 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 TULP1O00294 542 aaPredicted RBP14.37□□□□□ -0.11
HMGB3-204ENST00000448905 ATG13O75143 517 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 PAPSS2O95340 614 aaPredicted RBP14.37□□□□□ -0.11
HMGB3-204ENST00000448905 VNN2O95498 520 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 TDGF1P13385 188 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 HOXA6P31267 233 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 AVPR1AP37288 418 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 ACOT2P49753 483 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 TAF6P49848 677 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 GUCY2FP51841 1108 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 SATB1Q01826 763 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 SPEM2Q0P670 501 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 MCM6Q14566 821 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 LPAL2Q16609 132 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 ITPRIPL2Q3MIP1 535 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 CEP68Q76N32 757 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 SPPL2BQ8TCT7 592 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 RAD54LQ92698 747 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 TMX3Q96JJ7 454 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 PYM1Q9BRP8 204 aaKnown RBP14.37□□□□□ -0.11
HMGB3-204ENST00000448905 ZCWPW1Q9H0M4 648 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 CRISPLD1Q9H336 500 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 DPP3Q9NY33 737 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 AGO2Q9UKV8 859 aaKnown RBP14.37□□□□□ -0.11
HMGB3-204ENST00000448905 VWA8A3KMH1 1905 aa14.37□□□□□ -0.11
HMGB3-204ENST00000448905 GVINP1Q7Z2Y8 2422 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 SOBPA7XYQ1 873 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 CHURC1-FNTBB4DL54 471 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 HRO43593 1189 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 FAM189A1O60320 539 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 CTHP32929 405 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 PNPLA4P41247 253 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 FNTBP49356 437 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 GRSF1Q12849 480 aaKnown RBP eCLIP14.36□□□□□ -0.11
HMGB3-204ENST00000448905 SV2CQ496J9 727 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 CC2D1AQ6P1N0 951 aaPredicted RBP14.36□□□□□ -0.11
HMGB3-204ENST00000448905 BRAPQ7Z569 592 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.36□□□□□ -0.11
HMGB3-204ENST00000448905 NT5DC4Q86YG4 428 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 TTC8Q8TAM2 541 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 NETO1Q8TDF5 533 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 CACTINQ8WUQ7 758 aaKnown RBP14.36□□□□□ -0.11
HMGB3-204ENST00000448905 LARP4BQ92615 738 aaKnown RBP14.36□□□□□ -0.11
HMGB3-204ENST00000448905 RSPRY1Q96DX4 576 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 ST6GALNAC4Q9H4F1 302 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 GKN1Q9NS71 199 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 GTSE1Q9NYZ3 720 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 CCDC39Q9UFE4 941 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 EXOC7Q9UPT5 735 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 ZNF292O60281 2723 aa14.36□□□□□ -0.11
HMGB3-204ENST00000448905 EP300Q09472 2414 aaPredicted RBP14.36□□□□□ -0.11
HMGB3-204ENST00000448905 DCDC2BA2VCK2 349 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 KPNA7A9QM74 516 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 PPEF2O14830 753 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 SOAT2O75908 522 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 IL18RAPO95256 599 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 NFICP08651 508 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 PLCG1P19174 1290 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 TGM1P22735 817 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 DDX6P26196 483 aaKnown RBP eCLIP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 NMT1P30419 496 aaKnown RBP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 SOX9P48436 509 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 TSPY1Q01534 308 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 BFSP1Q12934 665 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 PON2Q15165 354 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 CSRP2Q16527 193 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 NFE2Q16621 373 aaPredicted RBP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 STXBP5Q5T5C0 1151 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 HEATR6Q6AI08 1181 aaKnown RBP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 ZNF720Q7Z2F6 126 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 CMTM8Q8IZV2 173 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 OR10T2Q8NGX3 314 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 GIPC2Q8TF65 315 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms