RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 HUS1O60921 280 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 TRPA1O75762 1119 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 NFX1Q12986 1120 aaKnown RBP6.4□□□□□ -1.39
VPS50-205ENST00000441602 CNGA2Q16280 664 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 HADHQ16836 314 aaKnown RBP6.4□□□□□ -1.39
VPS50-205ENST00000441602 ZNF394Q53GI3 561 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 HSP90B2PQ58FF3 399 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 CC2D1AQ6P1N0 951 aaPredicted RBP6.4□□□□□ -1.39
VPS50-205ENST00000441602 MON1BQ7L1V2 547 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 SERINC5Q86VE9 423 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 RHOT1Q8IXI2 618 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 TMEM192Q8IY95 271 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 OLIG1Q8TAK6 271 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 CD99L2Q8TCZ2 262 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 RNPC3Q96LT9 517 aaKnown RBP6.4□□□□□ -1.39
VPS50-205ENST00000441602 BEGAINQ9BUH8 593 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 HMX1Q9NP08 348 aaPredicted RBP6.4□□□□□ -1.39
VPS50-205ENST00000441602 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.4□□□□□ -1.39
VPS50-205ENST00000441602 OGFRQ9NZT2 677 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 STIM2Q9P246 746 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 PACSIN2Q9UNF0 486 aaPredicted RBP6.4□□□□□ -1.39
VPS50-205ENST00000441602 SQORQ9Y6N5 450 aa6.4□□□□□ -1.39
VPS50-205ENST00000441602 EVPLQ92817 2033 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 FAM187AA6NFU0 413 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 KBTBD13C9JR72 458 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 PDE2AO00408 941 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 PSTPIP1O43586 416 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 CILPO75339 1184 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ASGR1P07306 291 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 RRM1P23921 792 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 HOXA11P31270 313 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 CDH5P33151 784 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 RDXP35241 583 aaKnown RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 PIGHQ14442 188 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 KCNA10Q16322 511 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 PLEKHA7Q6IQ23 1121 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 KLHDC9Q8NEP7 349 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 RBM41Q96IZ5 413 aaKnown RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 TNIP3Q96KP6 325 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ZIC5Q96T25 663 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 KRT12Q99456 494 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ANKZF1Q9H8Y5 726 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 DDX56Q9NY93 547 aaKnown RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 FEZ2Q9UHY8 353 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 SNX9Q9Y5X1 595 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 M0QYV0 167 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ADAMTS4O75173 837 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 MMP8P22894 467 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 CTNNA1P35221 906 aaKnown RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 THPOP40225 353 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ZNF200P98182 395 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 INCA1Q0VD86 236 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ZNF268Q14587 947 aaPredicted RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 PTGISQ16647 500 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 FBXO47Q5MNV8 452 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 DPH6Q7L8W6 267 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 KLHL7Q8IXQ5 586 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 KRT222Q8N1A0 295 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 C1orf131Q8NDD1 294 aaKnown RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 OR6B3Q8NGW1 331 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 C18orf8Q96DM3 657 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 RUFY1Q96T51 708 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 EIF2AQ9BY44 585 aaKnown RBP6.39□□□□□ -1.39
VPS50-205ENST00000441602 SMYD3Q9H7B4 428 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 ACP6Q9NPH0 428 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 FAM114A2Q9NRY5 505 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 RNF186Q9NXI6 227 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 GIT1Q9Y2X7 761 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 PCDHA3Q9Y5H8 950 aa6.39□□□□□ -1.39
VPS50-205ENST00000441602 MYADML2A6NDP7 307 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 DDX3YO15523 660 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 ATMINO43313 823 aaPredicted RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 FGGP02679 453 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 CTSHP09668 335 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 ELNP15502 786 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 TNFRSF8P28908 595 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 CHRNA3P32297 505 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 RAD23BP54727 409 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 EPHB4P54760 987 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 PTP4A2Q12974 167 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 CUL1Q13616 776 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 DHX34Q14147 1143 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 C9orf57Q5W0N0 161 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 EMBQ6PCB8 327 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 FAM228AQ86W67 206 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 DNAAF5Q86Y56 855 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 EIF1ADQ8N9N8 165 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 C3orf20Q8ND61 904 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 APPL2Q8NEU8 664 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 GRK7Q8WTQ7 553 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 DDX27Q96GQ7 796 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 NXF3Q9H4D5 531 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 RBM12Q9NTZ6 932 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 SAGE1Q9NXZ1 904 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 ST3GAL5Q9UNP4 418 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 COG5Q9UP83 839 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 UTP11Q9Y3A2 253 aaKnown RBP6.38□□□□□ -1.39
VPS50-205ENST00000441602 IPPQ9Y573 584 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 SMIM28A0A1B0GU29 152 aa6.38□□□□□ -1.39
VPS50-205ENST00000441602 A8MXQ7 604 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms