RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 C1orf220Q5T0J3 134 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 TPGS2Q68CL5 300 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 C15orf39Q6ZRI6 1047 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 TRIML1Q8N9V2 468 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 CMASQ8NFW8 434 aaPredicted RBP20.04■□□□□ 0.8
SHH-204ENST00000441114 OR10T2Q8NGX3 314 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 ZNF707Q96C28 371 aaPredicted RBP20.04■□□□□ 0.8
SHH-204ENST00000441114 NECTIN4Q96NY8 510 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 RTP3Q9BQQ7 232 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 PRKD2Q9BZL6 878 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 NXF1Q9UBU9 619 aaKnown RBP20.04■□□□□ 0.8
SHH-204ENST00000441114 PRKAG3Q9UGI9 489 aa20.04■□□□□ 0.8
SHH-204ENST00000441114 GCLMP48507 274 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 NCOA4Q13772 614 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 SOWAHAQ2M3V2 549 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 SLC39A12Q504Y0 691 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 SV2AQ7L0J3 742 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 OSTM1Q86WC4 334 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 ADGRF2Q8IZF7 708 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 TOP6BLQ8N6T0 577 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 DUSP9Q99956 384 aaKnown RBP20.03■□□□□ 0.8
SHH-204ENST00000441114 MKNK1Q9BUB5 465 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 CD320Q9NPF0 282 aa20.03■□□□□ 0.8
SHH-204ENST00000441114 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.03■□□□□ 0.8
SHH-204ENST00000441114 DDX43Q9NXZ2 648 aaKnown RBP20.03■□□□□ 0.8
SHH-204ENST00000441114 AFF4Q9UHB7 1163 aaKnown RBP20.03■□□□□ 0.8
SHH-204ENST00000441114 DOCK6Q96HP0 2047 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 BICDL2A1A5D9 508 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 IKBKBO14920 756 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 VNN1O95497 513 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 LRG1P02750 347 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 ACAT1P24752 427 aaKnown RBP20.02■□□□□ 0.8
SHH-204ENST00000441114 TNNC1P63316 161 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 PPP3CAQ08209 521 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 PAK1Q13153 545 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 GPR17Q13304 367 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 UVSSAQ2YD98 709 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 ZNF699Q32M78 642 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 WDR72Q3MJ13 1102 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 ZACNQ401N2 412 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 DCAF17Q5H9S7 520 aaPredicted RBP20.02■□□□□ 0.8
SHH-204ENST00000441114 TCERG1LQ5VWI1 586 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 GJD3Q8N144 294 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 TMEM86AQ8N2M4 240 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 SYAP1Q96A49 352 aaPredicted RBP20.02■□□□□ 0.8
SHH-204ENST00000441114 ZCWPW1Q9H0M4 648 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 SLC27A5Q9Y2P5 690 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 DENND4AQ7Z401 1863 aa20.02■□□□□ 0.8
SHH-204ENST00000441114 SPTBN5Q9NRC6 3674 aaKnown RBP20.02■□□□□ 0.8
SHH-204ENST00000441114 HCRTO43612 131 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 HNRNPA1P09651 372 aaKnown RBP eCLIP20.01■□□□□ 0.79
SHH-204ENST00000441114 ATICP31939 592 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 PIK3CAP42336 1068 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 NTHL1P78549 312 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 MYL7Q01449 175 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 DUSP4Q13115 394 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 TTI2Q6NXR4 508 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 GRASPQ7Z6J2 395 aaPredicted RBP20.01■□□□□ 0.79
SHH-204ENST00000441114 ZC3H3Q8IXZ2 948 aaKnown RBP20.01■□□□□ 0.79
SHH-204ENST00000441114 TCEAL8Q8IYN2 117 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 INSL5Q9Y5Q6 135 aa20.01■□□□□ 0.79
SHH-204ENST00000441114 MTMR11A4FU01 709 aa20■□□□□ 0.79
SHH-204ENST00000441114 SLC16A3O15427 465 aaKnown RBP20■□□□□ 0.79
SHH-204ENST00000441114 XYLBO75191 536 aa20■□□□□ 0.79
SHH-204ENST00000441114 VNN2O95498 520 aa20■□□□□ 0.79
SHH-204ENST00000441114 HLA-DRAP01903 254 aa20■□□□□ 0.79
SHH-204ENST00000441114 TSPY1Q01534 308 aa20■□□□□ 0.79
SHH-204ENST00000441114 CCDC40Q4G0X9 1142 aa20■□□□□ 0.79
SHH-204ENST00000441114 ZNF667Q5HYK9 610 aa20■□□□□ 0.79
SHH-204ENST00000441114 CYP26C1Q6V0L0 522 aa20■□□□□ 0.79
SHH-204ENST00000441114 DPH6Q7L8W6 267 aa20■□□□□ 0.79
SHH-204ENST00000441114 LRRTM3Q86VH5 581 aa20■□□□□ 0.79
SHH-204ENST00000441114 DCP1BQ8IZD4 617 aaKnown RBP20■□□□□ 0.79
SHH-204ENST00000441114 ATAD1Q8NBU5 361 aa20■□□□□ 0.79
SHH-204ENST00000441114 MRPL45Q9BRJ2 306 aaKnown RBP20■□□□□ 0.79
SHH-204ENST00000441114 XYLT2Q9H1B5 865 aa20■□□□□ 0.79
SHH-204ENST00000441114 CRISPLD1Q9H336 500 aa20■□□□□ 0.79
SHH-204ENST00000441114 SNX25Q9H3E2 840 aa20■□□□□ 0.79
SHH-204ENST00000441114 HCFC1R1Q9NWW0 138 aa20■□□□□ 0.79
SHH-204ENST00000441114 C19orf67A6NJJ6 358 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 TNFRSF10AO00220 468 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 PDGFRBP09619 1106 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 HOXA9P31269 272 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 LHX1P48742 406 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 TWF1Q12792 350 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 SGSM1Q2NKQ1 1148 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 SPOPLQ6IQ16 392 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 SCARA5Q6ZMJ2 495 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 FILIP1Q7Z7B0 1213 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 TTC9BQ8N6N2 239 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 OR6B3Q8NGW1 331 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 KBTBD7Q8WVZ9 684 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 CEP63Q96MT8 703 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 PI4K2AQ9BTU6 479 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 WDR6Q9NNW5 1121 aaKnown RBP19.99■□□□□ 0.79
SHH-204ENST00000441114 TMLHEQ9NVH6 421 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 ABI2Q9NYB9 513 aaPredicted RBP19.99■□□□□ 0.79
SHH-204ENST00000441114 ARMCX3Q9UH62 379 aaPredicted RBP19.99■□□□□ 0.79
SHH-204ENST00000441114 NR2E1Q9Y466 385 aa19.99■□□□□ 0.79
SHH-204ENST00000441114 CLUHO75153 1309 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms