RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 HERC2P3Q9BVR0 1158 aa13.55□□□□□ -0.24
SCLT1-202ENST00000439369 GPR88Q9GZN0 384 aa13.55□□□□□ -0.24
SCLT1-202ENST00000439369 SDCBP2Q9H190 292 aa13.55□□□□□ -0.24
SCLT1-202ENST00000439369 SNX25Q9H3E2 840 aa13.55□□□□□ -0.24
SCLT1-202ENST00000439369 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.55□□□□□ -0.242e-6■■■■■ 94.8
SCLT1-202ENST00000439369 AJAP1Q9UKB5 411 aaPredicted RBP13.55□□□□□ -0.24
SCLT1-202ENST00000439369 BZW2Q9Y6E2 419 aaKnown RBP13.55□□□□□ -0.24
SCLT1-202ENST00000439369 SCN1AP35498 2009 aa13.55□□□□□ -0.24
SCLT1-202ENST00000439369 LCHNA4D1U4 455 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 LRRC53A6NM62 1247 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 F8W810 466 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 H7C4K7 107 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 FOXN3O00409 490 aaPredicted RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 FGF18O76093 207 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 SOD2P04179 222 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 WEE2P0C1S8 567 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 RABGGTBP53611 331 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 ERVK-21P61565 698 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 CREMQ03060 361 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 YWHAHQ04917 246 aaPredicted RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 USP41Q3LFD5 358 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 FAM171A1Q5VUB5 890 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 SFMBT2Q5VUG0 894 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 WSCD1Q658N2 575 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 FAM109BQ6ICB4 259 aaPredicted RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 OVOS1Q6IE37 1185 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 ANKS3Q6ZW76 656 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 TMEM173Q86WV6 379 aaPredicted RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 CRYBG2Q8N1P7 616 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 THEM5Q8N1Q8 247 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 HASPINQ8TF76 798 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 BCL7CQ8WUZ0 217 aaPredicted RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 TNIP3Q96KP6 325 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 TTPALQ9BTX7 342 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 C11orf84Q9BUA3 381 aaPredicted RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 NT5C1AQ9BXI3 368 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 GPR62Q9BZJ7 368 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 CHST7Q9NS84 486 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 ABHD10Q9NUJ1 306 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 ZNHIT6Q9NWK9 470 aaKnown RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 PUF60Q9UHX1 559 aaKnown RBP13.54□□□□□ -0.24
SCLT1-202ENST00000439369 SSX2IPQ9Y2D8 614 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 STXBP5LQ9Y2K9 1186 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 PCDHB4Q9Y5E5 795 aa13.54□□□□□ -0.24
SCLT1-202ENST00000439369 KIAA1671Q9BY89 1806 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 OR6C75A6NL08 312 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 GRXCR1A8MXD5 290 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 NT5C1B-RDH14C9J2C7 533 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CA3P07451 260 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 KRT5P13647 590 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CD58P19256 250 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 FECHP22830 423 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 IGFBP6P24592 240 aaPredicted RBP13.53□□□□□ -0.24
SCLT1-202ENST00000439369 ANXA13P27216 316 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CTNNB1P35222 781 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 GNL1P36915 607 aaPredicted RBP13.53□□□□□ -0.24
SCLT1-202ENST00000439369 PBX3P40426 434 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 PRKCIP41743 596 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 NDST1P52848 882 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CDH8P55286 799 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CDK17Q00537 523 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 TAP1Q03518 808 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 PTK2Q05397 1052 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 MRPL58Q14197 206 aaKnown RBP13.53□□□□□ -0.24
SCLT1-202ENST00000439369 STILQ15468 1287 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 MEA1Q16626 185 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 ZNF677Q86XU0 584 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 TC2NQ8N9U0 490 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 SPC24Q8NBT2 197 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 RBBP8NLQ8NC74 664 aaPredicted RBP13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CPLX3Q8WVH0 158 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 PIK3R5Q8WYR1 880 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 ELMO3Q96BJ8 720 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 ACBD6Q9BR61 282 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 MRPL45Q9BRJ2 306 aaKnown RBP13.53□□□□□ -0.24
SCLT1-202ENST00000439369 PBX4Q9BYU1 374 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 CDH9Q9ULB4 789 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 TSC2P49815 1807 aa13.53□□□□□ -0.24
SCLT1-202ENST00000439369 A8MXQ7 604 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 I3L4J1 428 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 RNF225M0QZC1 329 aaPredicted RBP13.52□□□□□ -0.25
SCLT1-202ENST00000439369 GFPT2O94808 682 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 SERPING1P05155 500 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 TKTP29401 623 aaKnown RBP13.52□□□□□ -0.25
SCLT1-202ENST00000439369 RAP1GAPP47736 663 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 RAD23BP54727 409 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 DSG1Q02413 1049 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 BMS1Q14692 1282 aaKnown RBP13.52□□□□□ -0.25
SCLT1-202ENST00000439369 MAPRE1Q15691 268 aaKnown RBP13.52□□□□□ -0.25
SCLT1-202ENST00000439369 ASIC2Q16515 512 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 LRIT3Q3SXY7 679 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 VARS2Q5ST30 1063 aaKnown RBP13.52□□□□□ -0.25
SCLT1-202ENST00000439369 PDE12Q6L8Q7 609 aaKnown RBP13.52□□□□□ -0.25
SCLT1-202ENST00000439369 ZNF280DQ6N043 979 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 TMEM270Q6UE05 265 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 CHRDL2Q6WN34 429 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 IRF2BP2Q7Z5L9 587 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 KLHL23Q8NBE8 558 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 CCDC112Q8NEF3 446 aa13.52□□□□□ -0.25
SCLT1-202ENST00000439369 OR6B3Q8NGW1 331 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms