RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CNGA2Q16280 664 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 PREPLQ4J6C6 727 aaPredicted RBP5.13□□□□□ -1.59
USP40-204ENST00000427947 TIGD2Q4W5G0 525 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 MIIPQ5JXC2 388 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 LMBRD2Q68DH5 695 aaPredicted RBP5.13□□□□□ -1.59
USP40-204ENST00000427947 PPP1R32Q7Z5V6 425 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 MPP5Q8N3R9 675 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 ZNF483Q8TF39 744 aaPredicted RBP5.13□□□□□ -1.59
USP40-204ENST00000427947 SUCLG2Q96I99 432 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 NUP62CLQ9H1M0 184 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 ZNF287Q9HBT7 754 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 STK32BQ9NY57 414 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 CTTNBP2NLQ9P2B4 639 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 MYO1CO00159 1063 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 TBC1D4O60343 1298 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 LPXNO60711 386 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 SUN1O94901 812 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 ZFPL1O95159 310 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 MYL3P08590 195 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 INSRRP14616 1297 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 ZKSCAN1P17029 563 aaPredicted RBP5.12□□□□□ -1.59
USP40-204ENST00000427947 SLC11A2P49281 568 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 UCP3P55916 312 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 KRTAP10-2P60368 255 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 CYP2A13Q16696 494 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 GEN1Q17RS7 908 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 LSM12Q3MHD2 195 aaKnown RBP5.12□□□□□ -1.59
USP40-204ENST00000427947 FAM160B1Q5W0V3 765 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 IL31Q6EBC2 164 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 CLNKQ7Z7G1 428 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 SLC15A4Q8N697 577 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 PSD4Q8NDX1 1056 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 MAML1Q92585 1016 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 HAS1Q92839 578 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 TMEM125Q96AQ2 219 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 MYEOVQ96EZ4 313 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 LRIG1Q96JA1 1093 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 ADAM2Q99965 735 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 ZNF341Q9BYN7 854 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 DPH1Q9BZG8 443 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 TTYH3Q9C0H2 523 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 VPS11Q9H270 941 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 SACM1LQ9NTJ5 587 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 ETAA1Q9NY74 926 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 GPRC5BQ9NZH0 403 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 AFF4Q9UHB7 1163 aaKnown RBP5.12□□□□□ -1.59
USP40-204ENST00000427947 FZD1Q9UP38 647 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 CORO2BQ9UQ03 480 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 TMX2Q9Y320 296 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 NEU2Q9Y3R4 380 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 SNX13Q9Y5W8 968 aa5.12□□□□□ -1.59
USP40-204ENST00000427947 PRAMEF33A0A0G2JMD5 474 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 RHPN2P1A8MT19 583 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 PRAMEF10O60809 474 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 PPFIA4O75335 1185 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 PEX11BO96011 259 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 THP07101 528 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 SLC5A1P13866 664 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 BMPR1AP36894 532 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 NEK3P51956 506 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 GUCY1B3Q02153 619 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 TCF15Q12870 199 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 CTBP1Q13363 440 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 PICALMQ13492 652 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 RAB32Q13637 225 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 CD300EQ496F6 205 aaPredicted RBP5.11□□□□□ -1.59
USP40-204ENST00000427947 AMOTQ4VCS5 1084 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 SLC44A4Q53GD3 710 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 ARMC6Q6NXE6 501 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 TAF2Q6P1X5 1199 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 KRT78Q8N1N4 520 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 DNAJC5GQ8N7S2 189 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 Q8NA96 180 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 NACC2Q96BF6 587 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 SLC46A1Q96NT5 459 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 BTBD1Q9H0C5 482 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 SMOC2Q9H3U7 446 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 SMURF2Q9HAU4 748 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 GALNT9Q9HCQ5 603 aa5.11□□□□□ -1.59
USP40-204ENST00000427947 A0A087WWL8 130 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 CENPVL1A0A0U1RR11 272 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 A0A1W2PS29 197 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 ANO9A1A5B4 782 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 TMEM200CA6NKL6 621 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 SPDEFO95238 335 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 FOSP01100 380 aaPredicted RBP5.1□□□□□ -1.59
USP40-204ENST00000427947 FDXRP22570 491 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 TOB1P50616 345 aaPredicted RBP5.1□□□□□ -1.59
USP40-204ENST00000427947 ANXA11P50995 505 aaKnown RBP5.1□□□□□ -1.59
USP40-204ENST00000427947 RPS7P62081 194 aaKnown RBP5.1□□□□□ -1.59
USP40-204ENST00000427947 FMO1Q01740 532 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 FPGSQ05932 587 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 TP53BP2Q13625 1128 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 BOP1Q14137 746 aaKnown RBP5.1□□□□□ -1.59
USP40-204ENST00000427947 PUM1Q14671 1186 aaKnown RBP eCLIP5.1□□□□□ -1.59
USP40-204ENST00000427947 LONRF3Q496Y0 759 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 C3orf38Q5JPI3 329 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 FNDC7Q5VTL7 733 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 KCNV1Q6PIU1 500 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms