RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 RPLP2P05387 115 aaKnown RBP6.35□□□□□ -1.39
LINC01040-201ENST00000425048 IGKV2-30P06310 120 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 EBLN1P0CF75 366 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 NDUFV1P49821 464 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 IL10RAQ13651 578 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 CEP85Q6P2H3 762 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 ZNF551Q7Z340 670 aaPredicted RBP6.35□□□□□ -1.39
LINC01040-201ENST00000425048 VKORC1Q9BQB6 163 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 KRTAP1-5Q9BYS1 174 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 SERGEFQ9UGK8 458 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 IPPQ9Y573 584 aa6.35□□□□□ -1.39
LINC01040-201ENST00000425048 HTRA2O43464 458 aaPredicted RBP6.34□□□□□ -1.39
LINC01040-201ENST00000425048 SOAT2O75908 522 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 JTBO76095 146 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 VIL1P09327 827 aaKnown RBP6.34□□□□□ -1.39
LINC01040-201ENST00000425048 NDUFB7P17568 137 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 LPOP22079 712 aaPredicted RBP6.34□□□□□ -1.39
LINC01040-201ENST00000425048 MORN5Q5VZ52 161 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 SLC9A4Q6AI14 798 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 NEK8Q86SG6 692 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 DMRTA2Q96SC8 542 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 ACTRT3Q9BYD9 372 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 MKS1Q9NXB0 559 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 DKK3Q9UBP4 350 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 LIMCH1Q9UPQ0 1083 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 PCDHB1Q9Y5F3 818 aa6.34□□□□□ -1.39
LINC01040-201ENST00000425048 ZNF521Q96K83 1311 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 KCNAB3O43448 404 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 EPHB2P29323 1055 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 CYP2C19P33261 490 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 KLF9Q13886 244 aaPredicted RBP6.33□□□□□ -1.4
LINC01040-201ENST00000425048 ACAP2Q15057 778 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 TBCCQ15814 346 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 ETFDHQ16134 617 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 BRD9Q9H8M2 597 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 ARHGEF3Q9NR81 526 aa6.33□□□□□ -1.4
LINC01040-201ENST00000425048 SIDT1Q9NXL6 827 aaKnown RBP6.33□□□□□ -1.4
LINC01040-201ENST00000425048 CCDC154A6NI56 674 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 MOSPD3O75425 235 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 CLSTN1O94985 981 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 C5AR1P21730 350 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 EDNRBP24530 442 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 MPGP29372 298 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 ALDH9A1P49189 494 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 CCDC93Q567U6 631 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 DENND1AQ8TEH3 1009 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 PUS7LQ9H0K6 701 aaKnown RBP6.32□□□□□ -1.4
LINC01040-201ENST00000425048 GNL3LQ9NVN8 582 aaKnown RBP6.32□□□□□ -1.4
LINC01040-201ENST00000425048 RLIMQ9NVW2 624 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 ETAA1Q9NY74 926 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 SH3BP4Q9P0V3 963 aa6.32□□□□□ -1.4
LINC01040-201ENST00000425048 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.32□□□□□ -1.4
LINC01040-201ENST00000425048 KLHL33A6NCF5 533 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 PPP6CO00743 305 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 NXPH3O95157 252 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 CHEK2O96017 543 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 GNAI3P08754 354 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 GNAI1P63096 354 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 HABP2Q14520 560 aaPredicted RBP6.31□□□□□ -1.4
LINC01040-201ENST00000425048 PROSER3Q2NL68 480 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 INAVAQ3KP66 663 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 C3orf36Q3SXR2 165 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 YTHDF3Q7Z739 585 aaKnown RBP6.31□□□□□ -1.4
LINC01040-201ENST00000425048 CNTD1Q8N815 330 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 C1orf162Q8NEQ5 155 aaPredicted RBP6.31□□□□□ -1.4
LINC01040-201ENST00000425048 ATRIPQ8WXE1 791 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 FAM136AQ96C01 138 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 ZNF48Q96MX3 618 aaPredicted RBP6.31□□□□□ -1.4
LINC01040-201ENST00000425048 VRK1Q99986 396 aaPredicted RBP6.31□□□□□ -1.4
LINC01040-201ENST00000425048 SMOC2Q9H3U7 446 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 CFAP97Q9P2B7 532 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 TBC1D30Q9Y2I9 924 aa6.31□□□□□ -1.4
LINC01040-201ENST00000425048 TMA7Q9Y2S6 64 aaKnown RBP6.31□□□□□ -1.4
LINC01040-201ENST00000425048 F2RL2O00254 374 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 GJB1P08034 283 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 CYP2D6P10635 497 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 HOXB6P17509 224 aaKnown RBP6.3□□□□□ -1.4
LINC01040-201ENST00000425048 ITGALP20701 1170 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 MALP21145 153 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 PSMC1P62191 440 aaKnown RBP6.3□□□□□ -1.4
LINC01040-201ENST00000425048 KHDC1Q4VXA5 237 aaKnown RBP6.3□□□□□ -1.4
LINC01040-201ENST00000425048 RBM20Q5T481 1227 aaKnown RBP6.3□□□□□ -1.4
LINC01040-201ENST00000425048 SDE2Q6IQ49 451 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 SLC18B1Q6NT16 456 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 TAF2Q6P1X5 1199 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 ZNF66Q6ZN08 573 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 SLC29A4Q7RTT9 530 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 TTC7BQ86TV6 843 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 FANCBQ8NB91 859 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 PSD4Q8NDX1 1056 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 TBC1D5Q92609 795 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 KAT5Q92993 513 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 FAXDC2Q96IV6 333 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 CNPPD1Q9BV87 410 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 SIK2Q9H0K1 926 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 SLC5A4Q9NY91 659 aa6.3□□□□□ -1.4
LINC01040-201ENST00000425048 ZNF785A8K8V0 405 aa6.29□□□□□ -1.4
LINC01040-201ENST00000425048 JUPP14923 745 aa6.29□□□□□ -1.4
LINC01040-201ENST00000425048 SMARCA1P28370 1054 aa6.29□□□□□ -1.4
LINC01040-201ENST00000425048 SNAPC2Q13487 334 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms