RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PPP2R3CQ969Q6 453 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 OXNAD1Q96HP4 312 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 DHRS4Q9BTZ2 278 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 NMUR2Q9GZQ4 415 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 CD209Q9NNX6 404 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 KCND2Q9NZV8 630 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 RABGEF1Q9UJ41 708 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 PLA2G4CQ9UP65 541 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 ZNF536O15090 1300 aa11.27□□□□□ -0.6
USP54-204ENST00000422491 ZSCAN9O15535 394 aaPredicted RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 PSTPIP1O43586 416 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 BUD23O43709 281 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 LIASO43766 372 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 DHRS4L1P0CG22 281 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 TAS2R40P59535 323 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ACTR3P61158 418 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 PDIA2Q13087 525 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 MORF4L2Q15014 288 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 PRKD1Q15139 912 aaPredicted RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 LLGL2Q6P1M3 1020 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ADGRD1Q6QNK2 874 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ACAD11Q709F0 780 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 NCAPG2Q86XI2 1143 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 TMPRSS6Q8IU80 811 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 C12orf56Q8IXR9 622 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 RBM12BQ8IXT5 1001 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 KATNAL2Q8IYT4 538 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 OGFOD1Q8N543 542 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 SPIRE2Q8WWL2 714 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 FAM81BQ96LP2 452 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 RANBP17Q9H2T7 1088 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 NDE1Q9NXR1 346 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 GALNT8Q9NY28 637 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ARMCX1Q9P291 453 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 SERPINB13Q9UIV8 391 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 CLUHO75153 1309 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 CAPN14A8MX76 684 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 CHMP2AO43633 222 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 PSMD10O75832 226 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 PROSCO94903 275 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 CYP3A4P08684 503 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ETS1P14921 441 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 GRIA2P42262 883 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 CPA2P48052 419 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 INHBCP55103 352 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ARL4CP56559 192 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 NOP14P78316 857 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 SEPT7Q16181 437 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 TRMT5Q32P41 509 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 RNASEH2BQ5TBB1 312 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 SMIM5Q71RC9 77 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ST13P4Q8IZP2 240 aaPredicted RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 CCDC110Q8TBZ0 833 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 NAT14Q8WUY8 206 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 ALG13Q9NP73 1137 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 DDX4Q9NQI0 724 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 DNAAF2Q9NVR5 837 aaKnown RBP11.27□□□□□ -0.61
USP54-204ENST00000422491 DNPEPQ9ULA0 475 aa11.27□□□□□ -0.61
USP54-204ENST00000422491 B2RBV5 119 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 H3BRJ5 948 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 K7ENM7 598 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 RGL2O15211 777 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 TM7SF2O76062 418 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 IL1BP01584 269 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 MYL2P10916 166 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 ETV4P43268 484 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 ARSEP51690 589 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 SH3BGRP55822 239 aaPredicted RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 AP2B1P63010 937 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 MAP3K10Q02779 954 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 MFSD14BQ5SR56 506 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 CENPUQ71F23 418 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 PHLDB2Q86SQ0 1253 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 CHSY1Q86X52 802 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 SCUBE1Q8IWY4 988 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 RHOT1Q8IXI2 618 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 XXYLT1Q8NBI6 393 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 RBM15BQ8NDT2 890 aaKnown RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 DHX38Q92620 1227 aaKnown RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 WDR18Q9BV38 432 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 AMNQ9BXJ7 453 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 MIS12Q9H081 205 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 EBF3Q9H4W6 596 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 ZDHHC7Q9NXF8 308 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 HSPBP1Q9NZL4 362 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 PPM1HQ9ULR3 514 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 POLIQ9UNA4 740 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 DAGLAQ9Y4D2 1042 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 GOLGA8RI6L899 631 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 BANF1O75531 89 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 USP1O94782 785 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 CALCAP01258 141 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 IL1R1P14778 569 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 CCNFP41002 786 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 MCCD1P59942 119 aaPredicted RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 SNAP25P60880 206 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 GPS1Q13098 491 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 DRICH1Q6PGQ1 229 aaPredicted RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 ALYREFQ86V81 257 aaKnown RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 TREML1Q86YW5 311 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms