RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FNDC1Q4ZHG4 1894 aaPredicted RBP18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 TRIM72Q6ZMU5 477 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 DPH6Q7L8W6 267 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 METTL23Q86XA0 190 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 LNX1Q8TBB1 728 aaPredicted RBP18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 TMEM176AQ96HP8 235 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 SENP8Q96LD8 212 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 TRIOBPQ9H2D6 2365 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 USP27XA6NNY8 438 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 ZBBXA8MT70 800 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 A8MXQ7 604 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 DDX3XO00571 662 aaKnown RBP eCLIP18.24■□□□□ 0.516e-7■■□□□ 14.3
CCDC28B-202ENST00000421922 SPTLC1O15269 473 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 KRT86O43790 486 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 TACC1O75410 805 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 MMEP08473 750 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 PPP1R2P3Q6NXS1 205 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 UNC93AQ86WB7 457 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 TMEM86AQ8N2M4 240 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 RABGGTAQ92696 567 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 HEXIM2Q96MH2 286 aaKnown RBP18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 CASD1Q96PB1 797 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 MRPL45Q9BRJ2 306 aaKnown RBP18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 ACP6Q9NPH0 428 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 LZTFL1Q9NQ48 299 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 NAGPAQ9UK23 515 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 L1RE1Q9UN81 338 aa18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 COLQQ9Y215 455 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-202ENST00000421922 TMCO5BA8MYB1 307 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 H2AFZP0C0S5 128 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 BRD2P25440 801 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 GNL1P36915 607 aaPredicted RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 GATMP50440 423 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 RAD23BP54727 409 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 FMO1Q01740 532 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 DSC1Q08554 894 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 SOWAHAQ2M3V2 549 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 PAN2Q504Q3 1202 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 SGO2Q562F6 1265 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 PSRC1Q6PGN9 363 aaPredicted RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 H2AFVQ71UI9 128 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 BADQ92934 168 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 TNIP3Q96KP6 325 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 PAAF1Q9BRP4 392 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 COLEC11Q9BWP8 271 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 DSEQ9UL01 958 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 KIAA1257Q9ULG3 409 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 PRG3Q9Y2Y8 225 aaPredicted RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 REXO2Q9Y3B8 237 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 TRAPPC3O43617 180 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 DDHD2O94830 711 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 CALCAP01258 141 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 FAM163BP0C2L3 166 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 VDRP11473 427 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 WARSP23381 471 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 WDR5P61964 334 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 ORC1Q13415 861 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 STILQ15468 1287 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 PTPN14Q15678 1187 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 DNTTIP2Q5QJE6 756 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 SPOUT1Q5T280 376 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 ZNF280BQ86YH2 543 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 COLGALT2Q8IYK4 626 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 PDCL2Q8N4E4 241 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 SLC4A11Q8NBS3 891 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 C3orf58Q8NDZ4 430 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 HASPINQ8TF76 798 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 LBHD1Q9BQE6 289 aaPredicted RBP18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 SYT11Q9BT88 431 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 ELOVL4Q9GZR5 314 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 HMGXB4Q9UGU5 601 aa18.23■□□□□ 0.51
CCDC28B-202ENST00000421922 ATP8B3O60423 1300 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 KIF2AO00139 706 aaPredicted RBP18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 ZNF263O14978 683 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 RTN2O75298 545 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 TADA2AO75478 443 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 KIF4AO95239 1232 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 FGBP02675 491 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 CHRNB2P17787 502 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 LHX1P48742 406 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 FAM117BQ6P1L5 589 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 OTOP2Q7RTS6 562 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 REXO1L1PQ8IX06 675 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 SLC30A5Q8TAD4 765 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 ZNF606Q8WXB4 792 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 CTNNBL1Q8WYA6 563 aaPredicted RBP18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 DDX1Q92499 740 aaKnown RBP18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 DPF3Q92784 378 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 C16orf45Q96MC5 204 aaPredicted RBP18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 TWNKQ96RR1 684 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 TMEM175Q9BSA9 504 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 NRDE2Q9H7Z3 1164 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 FAN1Q9Y2M0 1017 aa18.22■□□□□ 0.51
CCDC28B-202ENST00000421922 TMEM189-UBE2V1I3L0A0 370 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 KIF5CO60282 957 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 LSM8O95777 96 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 ALDH2P05091 517 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 GZMAP12544 262 aa18.21■□□□□ 0.51
CCDC28B-202ENST00000421922 NSFP46459 744 aaKnown RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms