RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HCRTO43612 131 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 EOMESO95936 686 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 RAG1P15918 1043 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 NSFP46459 744 aaKnown RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 ZNF132P52740 706 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 RAD23BP54727 409 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 TCTN1Q2MV58 587 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 SV2CQ496J9 727 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 CLLU1OSQ5K130 101 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 FAM117BQ6P1L5 589 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 DSTYKQ6XUX3 929 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 ACOT1Q86TX2 421 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ZNF598Q86UK7 904 aaKnown RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 UBR7Q8N806 425 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 C3orf58Q8NDZ4 430 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 OLIG1Q8TAK6 271 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 TMEM176AQ96HP8 235 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 NOX5Q96PH1 765 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 FAM193BQ96PV7 902 aaPredicted RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 TSPAN18Q96SJ8 248 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 NT5C1AQ9BXI3 368 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 SNX25Q9H3E2 840 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 FAM49BQ9NUQ9 324 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 TBX21Q9UL17 535 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 CAPN6Q9Y6Q1 641 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 F8W810 466 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 RTN2O75298 545 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 TACC1O75410 805 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 URI1O94763 535 aaPredicted RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 LMO2P25791 158 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 GNL1P36915 607 aaPredicted RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 OR1G1P47890 313 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 GATMP50440 423 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 GRIK3Q13003 919 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 CLEC16AQ2KHT3 1053 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 NOMO2Q5JPE7 1267 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 WSCD1Q658N2 575 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ZNF677Q86XU0 584 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ZNF280BQ86YH2 543 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 SLC4A11Q8NBS3 891 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 URGCPQ8TCY9 931 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 WHAMMQ8TF30 809 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ZNF653Q96CK0 615 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ARHGEF26Q96DR7 871 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ALS2CR12Q96Q35 445 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 LPIN3Q9BQK8 851 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 ZSWIM1Q9BR11 485 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 GOLPH3Q9H4A6 298 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 OSGEPQ9NPF4 335 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 TMEM161AQ9NX61 479 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 CTTNBP2NLQ9P2B4 639 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 L1RE1Q9UN81 338 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 CNTN6Q9UQ52 1028 aa3.95□□□□□ -1.78
RTN4-208ENST00000404909 PRG3Q9Y2Y8 225 aaPredicted RBP3.95□□□□□ -1.78
RTN4-208ENST00000404909 CTAGE9A4FU28 777 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 ANKRD62A6NC57 917 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 TRIM43BA6NCK2 446 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 PJA2O43164 708 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 PALMO75781 387 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 STAU1O95793 577 aaKnown RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 ACRP10323 421 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 GZMAP12544 262 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 CSF2RAP15509 400 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 ACAT1P24752 427 aaKnown RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 ITGB8P26012 769 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 LRPAP1P30533 357 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 BRCC3P46736 316 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 FAM189BP81408 668 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 TUSC3Q13454 348 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 UPP1Q16831 310 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 C1orf53Q5VUE5 145 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 ACAD10Q6JQN1 1059 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 ADGRF2Q8IZF7 708 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 PDCL2Q8N4E4 241 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 C1orf131Q8NDD1 294 aaKnown RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 SLC35G2Q8TBE7 412 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 APBB2Q92870 758 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 TRIM43Q96BQ3 446 aaPredicted RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 SENP8Q96LD8 212 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 PSMB7Q99436 277 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 C11orf70Q9BRQ4 267 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 DPEP3Q9H4B8 488 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 ST7Q9NRC1 585 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 TBC1D13Q9NVG8 400 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 CEP83Q9Y592 693 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 TBKBP1A7MCY6 615 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 TMEM110-MUSTN1A8MSY1 372 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 M0QYV0 167 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 MED7O43513 233 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 B4GALT3O60512 393 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 DDHD2O94830 711 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 FTCDO95954 541 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 ITGB1P05556 798 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 PAEPP09466 180 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 TMEM253P0C7T8 217 aa3.94□□□□□ -1.78
RTN4-208ENST00000404909 UNGP13051 313 aaPredicted RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 RPL9P32969 192 aaKnown RBP3.94□□□□□ -1.78
RTN4-208ENST00000404909 PSMC1P62191 440 aaKnown RBP3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms