RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MRPL43Q8N983 215 aaKnown RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 URGCPQ8TCY9 931 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ACAP3Q96P50 834 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 TSG101Q99816 390 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 TCHPQ9BT92 498 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 MRPL9Q9BYD2 267 aaKnown RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 TRIM6Q9C030 488 aaPredicted RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 PCIF1Q9H4Z3 704 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ASB7Q9H672 318 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 TOPORSQ9NS56 1045 aaPredicted RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 MARCH5Q9NX47 278 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 SNTG2Q9NY99 539 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 PARP2Q9UGN5 583 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 DERAQ9Y315 318 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 CACNA1BQ00975 2339 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 ZNF233A6NK53 670 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 C2CD4DB7Z1M9 353 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 LOC730098B7Z3J9 87 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 PTGESO14684 152 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 CETN3O15182 167 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 IL18RAPO95256 599 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 GNA14O95837 355 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 CXCL8P10145 99 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 ZNF18P17022 549 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 PSMC2P35998 433 aaKnown RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 CASP4P49662 377 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 MYL5Q02045 173 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 CYP24A1Q07973 514 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 DSC1Q08554 894 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 PSMD6Q15008 389 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 PTPN14Q15678 1187 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 C1orf220Q5T0J3 134 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 SPATA1Q5VX52 437 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 KLHL10Q6JEL2 608 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 FRMD5Q7Z6J6 570 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 DHX40Q8IX18 779 aaKnown RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 CSGALNACT2Q8N6G5 542 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 NOC3LQ8WTT2 800 aaKnown RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 SAAL1Q96ER3 474 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 ZMAT2Q96NC0 199 aaKnown RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 PPP1R10Q96QC0 940 aaKnown RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 FAM213AQ9BRX8 229 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 CCDC94Q9BW85 323 aaPredicted RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 NAT10Q9H0A0 1025 aaKnown RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 ATP13A2Q9NQ11 1180 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 PRKAG3Q9UGI9 489 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 LZTS1Q9Y250 596 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 FAN1Q9Y2M0 1017 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 C2CD2Q9Y426 696 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.94□□□□□ -0.82
VPS53-203ENST00000401468 DENND4CQ5VZ89 1909 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 TICRRQ7Z2Z1 1910 aa9.94□□□□□ -0.82
VPS53-203ENST00000401468 WDR87Q6ZQQ6 2873 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 KMT2BQ9UMN6 2715 aaPredicted RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 DCHS1Q96JQ0 3298 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 CASTOR2A6NHX0 329 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 PRR33A8MZF0 331 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 PMM2O15305 246 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 EXOC3O60645 756 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 CNPP09543 421 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 CTSAP10619 480 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 HARSP12081 509 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 ALADP13716 330 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 CYP3A5P20815 502 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 KLRC2P26717 231 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 ZNF165P49910 485 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 CYP2J2P51589 502 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 OSTNP61366 133 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 SURF1Q15526 300 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 SEZ6Q53EL9 994 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 GLRA4Q5JXX5 417 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 PRSS55Q6UWB4 352 aaPredicted RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 C15orf39Q6ZRI6 1047 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 INTS8Q75QN2 995 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 DDX53Q86TM3 631 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 PALB2Q86YC2 1186 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 TRIM59Q8IWR1 403 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 COLGALT2Q8IYK4 626 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 CXorf38Q8TB03 319 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 PLEKHO2Q8TD55 490 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 PARD3BQ8TEW8 1205 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 SLC22A17Q8WUG5 538 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 SUSD6Q92537 303 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 ANP32EQ9BTT0 268 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 PHF7Q9BWX1 381 aaPredicted RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 GPR62Q9BZJ7 368 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 THAP9Q9H5L6 903 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 RPF1Q9H9Y2 349 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 METTL14Q9HCE5 456 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 NGRNQ9NPE2 291 aaKnown RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 RBAKQ9NYW8 714 aaPredicted RBP9.93□□□□□ -0.82
VPS53-203ENST00000401468 KANSL3Q9P2N6 904 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 FRMD4BQ9Y2L6 1034 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 BAHCC1Q9P281 2608 aa9.93□□□□□ -0.82
VPS53-203ENST00000401468 MYH10P35580 1976 aa9.92□□□□□ -0.82
VPS53-203ENST00000401468 OBSL1O75147 1896 aa9.92□□□□□ -0.82
VPS53-203ENST00000401468 PTPRJQ12913 1337 aa9.92□□□□□ -0.82
VPS53-203ENST00000401468 SMIM28A0A1B0GU29 152 aa9.92□□□□□ -0.82
VPS53-203ENST00000401468 GOLGA8IPA6NC78 632 aa9.92□□□□□ -0.82
VPS53-203ENST00000401468 TMEM221A6NGB7 291 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms