RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ZNF804AQ7Z570 1209 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 SEPT12Q8IYM1 358 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 NDUFAF2Q8N183 169 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ACSF2Q96CM8 615 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 HSPBAP1Q96EW2 488 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ANO3Q9BYT9 981 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 GANQ9H2C0 597 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 TAS2R1Q9NYW7 299 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 AK5Q9Y6K8 562 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 C1orf232A0A0U1RR37 186 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 TCRBV5S4A2TA0A5A2 114 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ARHGEF37A1IGU5 675 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 IQCA1LA6NCM1 817 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 CAPN8A6NHC0 703 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ERVV-2B6SEH9 535 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 SGPL1O95470 568 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ASMTLO95671 621 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ALADP13716 330 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 NELFEP18615 380 aaKnown RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 SNAP25P60880 206 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 MRPS15P82914 257 aaKnown RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ACVR2BQ13705 512 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 TFDP1Q14186 410 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ANO4Q32M45 955 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 CERKLQ49MI3 558 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 RSBN1LQ6PCB5 846 aaPredicted RBP9.76□□□□□ -0.85
COL28A1-201ENST00000399429 KCTD6Q8NC69 237 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 C17orf50Q8WW18 174 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 AGBL1Q96MI9 1066 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ING2Q9H160 280 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 ZDHHC18Q9NUE0 388 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM59LQ9UK28 342 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 BLOC1S6Q9UL45 172 aa9.76□□□□□ -0.85
COL28A1-201ENST00000399429 OR6B1O95007 311 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 RRM1P23921 792 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ECHS1P30084 290 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 HOXA13P31271 388 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 CDC16Q13042 620 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ZNF394Q53GI3 561 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 PPP1R2P3Q6NXS1 205 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 TTC27Q6P3X3 843 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ZDHHC24Q6UX98 284 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 RAPH1Q70E73 1250 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 LNX1Q8TBB1 728 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 CEP95Q96GE4 821 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 NMUR2Q9GZQ4 415 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 C20orf96Q9NUD7 363 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 AURKCQ9UQB9 309 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ANKRD33BA6NCL7 494 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 TRMUO75648 421 aaKnown RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 EYA4O95677 639 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 CDK8P49336 464 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 FXR2P51116 673 aaKnown RBP eCLIP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 RPS6KA2Q15349 733 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 AOC3Q16853 763 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 MROH9Q5TGP6 573 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ITPRIPL1Q6GPH6 555 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 TTC33Q6PID6 262 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 POTEAQ6S8J7 498 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 NET1Q7Z628 596 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 TMCO5AQ8N6Q1 288 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 CCDC90BQ9GZT6 254 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 GRHL1Q9NZI5 618 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 LNPEPQ9UIQ6 1025 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 MROH1Q8NDA8 1641 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 F5H423 210 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ASLP04424 464 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ZSCAN5DPP0CG00 497 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 PDAP1Q13442 181 aaKnown RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 LPIN1Q14693 890 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 NRF1Q16656 503 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 GALNTL6Q49A17 601 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 PARP10Q53GL7 1025 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ASPRV1Q53RT3 343 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 C11orf63Q6NUN7 778 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM110Q86TL2 294 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 SIX5Q8N196 739 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 PAF1Q8N7H5 531 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 ZBTB8BQ8NAP8 495 aaPredicted RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 RBM15BQ8NDT2 890 aaKnown RBP9.75□□□□□ -0.85
COL28A1-201ENST00000399429 FBXO36Q8NEA4 188 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 FOXP3Q9BZS1 431 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 PCSK1NQ9UHG2 260 aa9.75□□□□□ -0.85
COL28A1-201ENST00000399429 BTNL10A8MVZ5 291 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PIK3CDO00329 1044 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 HNRNPDLO14979 420 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 SLC16A3O15427 465 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 CAMTA2O94983 1202 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 RASA1P20936 1047 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 BTDP43251 543 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 WDR4P57081 412 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 RPS8P62241 208 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 TTC7BQ86TV6 843 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 TRABD2AQ86V40 505 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 XXYLT1Q8NBI6 393 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 HSPH1Q92598 858 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ACCSQ96QU6 501 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 EIF2AQ9BY44 585 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 SNX25Q9H3E2 840 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 SPC25Q9HBM1 224 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms