RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MARCH10Q8NA82 808 aaPredicted RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 ANKRD49Q8WVL7 239 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 AHCYL2Q96HN2 611 aaKnown RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 STMN3Q9NZ72 180 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 VPS51Q9UID3 782 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 BLOC1S6Q9UL45 172 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 KDM5DQ9BY66 1539 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 C16orf96A6NNT2 1141 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 P4HA2O15460 535 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 PMPCBO75439 489 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 SOAT2O75908 522 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 SOX11P35716 441 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 PRCPP42785 496 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 SLC1A1P43005 524 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 GCLCP48506 637 aaPredicted RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 RPS7P62081 194 aaKnown RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 ELAVL2Q12926 359 aaKnown RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 C9orf131Q5VYM1 1079 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 UGT3A1Q6NUS8 523 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 POMGNT2Q8NAT1 580 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 CENPTQ96BT3 561 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 RBBP8Q99708 897 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 MTA3Q9BTC8 594 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 MRPL1Q9BYD6 325 aaKnown RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 UVRAGQ9P2Y5 699 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 TRMT6Q9UJA5 497 aaKnown RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 ZNF229Q9UJW7 825 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 VPS28Q9UK41 221 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 POLR1DQ9Y2S0 133 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 IFRD1O00458 451 aaPredicted RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 CDC25BP30305 580 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 PCYT1AP49585 367 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 BTG3Q14201 252 aaPredicted RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 CASP8Q14790 479 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 NCAPHQ15003 741 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 MTSS1LQ765P7 747 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 LUZP2Q86TE4 346 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 HORMAD1Q86X24 394 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 ANKMY2Q8IV38 441 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 ATL2Q8NHH9 583 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 BLOC1S5Q8TDH9 187 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 FAM162AQ96A26 154 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 VPS50Q96JG6 964 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 FAM84BQ96KN1 310 aaPredicted RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 AGBL1Q96MI9 1066 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 CGRRF1Q99675 332 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 PARD6BQ9BYG5 372 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 NOP53Q9NZM5 478 aaKnown RBP7.51□□□□□ -1.21
UPF2-203ENST00000397053 KLK14Q9P0G3 267 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 DAGLAQ9Y4D2 1042 aa7.51□□□□□ -1.21
UPF2-203ENST00000397053 FAM187AA6NFU0 413 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 VWA5AO00534 786 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ENO3P13929 434 aaPredicted RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 S100A5P33763 92 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TRIM32Q13049 653 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PRKAA1Q13131 559 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TBC1D10CQ8IV04 446 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 CSGALNACT1Q8TDX6 532 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 SMAD5Q99717 465 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 ALG13Q9NP73 1137 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 NSMCE4AQ9NXX6 385 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 CYP39A1Q9NYL5 469 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 OVOS2A0A0G2JMS6 1433 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 OVOS2A0A0J9YW53 1432 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PTPRTO14522 1441 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 OVOS2Q6IE36 1432 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 GOLGA8RI6L899 631 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PDXKO00764 312 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ADCY3O60266 1144 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PBLDP30039 288 aaPredicted RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 PTGER2P43116 358 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 MAP3K7CLP57077 242 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 MAGOHP61326 146 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 RCOR2Q8IZ40 523 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ATG4CQ96DT6 458 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TMA16Q96EY4 203 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 HPDLQ96IR7 371 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 CHAMP1Q96JM3 812 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 FAR2Q96K12 515 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 AGPAT1Q99943 283 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 OSBPL3Q9H4L5 887 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 MYOZ2Q9NPC6 264 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 KRT84Q9NSB2 600 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 GJB4Q9NTQ9 266 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TMEM39AQ9NV64 488 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 IMPAD1Q9NX62 359 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 JCADQ9P266 1359 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ATP6V1HQ9UI12 483 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 SCAF8Q9UPN6 1271 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 PSMD14O00487 310 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 AKAP10O43572 662 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TBC1D12O60347 775 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PQBP1O60828 265 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 FGFR1P11362 822 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 CYP19A1P11511 503 aaPredicted RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 DPEP1P16444 411 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ITGALP20701 1170 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 KLRC2P26717 231 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TRIM71Q2Q1W2 868 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 CES5AQ6NT32 575 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms