RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MUM1Q2TAK8 710 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 HSDL1Q3SXM5 330 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 TAPT1Q6NXT6 567 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 CCDC62Q6P9F0 684 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 EPM2AIP1Q7L775 607 aaPredicted RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 ADAT2Q7Z6V5 191 aaKnown RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 LONP2Q86WA8 852 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 CCDC60Q8IWA6 550 aaPredicted RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 U2AF1L4Q8WU68 220 aaKnown RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 TIPINQ9BVW5 301 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 PITPNM3Q9BZ71 974 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 G3BP2Q9UN86 482 aaKnown RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 STARD13Q9Y3M8 1113 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 USH1CQ9Y6N9 552 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 MAGEB2O15479 319 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ZNF862O60290 1169 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 FARP2O94887 1054 aaPredicted RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 GGPS1O95749 300 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 GH1P01241 217 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 T-ENOLP0DO92 83 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 BRAFP15056 766 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ICAM3P32942 547 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ADCYAP1R1P41586 468 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 STAT1P42224 750 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ARSHQ5FYA8 562 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 DNAJC14Q6Y2X3 702 aaPredicted RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 MIER3Q7Z3K6 550 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 NLRX1Q86UT6 975 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 KCTD17Q8N5Z5 321 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ANKRD42Q8N9B4 389 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 PHC3Q8NDX5 983 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 OLIG1Q8TAK6 271 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 MAIP1Q8WWC4 291 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ALG3Q92685 438 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ERP27Q96DN0 273 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 LRRC37BQ96QE4 947 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 MAF1Q9H063 256 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 BHMT2Q9H2M3 363 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 DENND2DQ9H6A0 471 aaPredicted RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 JPH1Q9HDC5 661 aaPredicted RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 KCNK9Q9NPC2 374 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 SIX2Q9NPC8 291 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 TBC1D22BQ9NU19 505 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 NMRK1Q9NWW6 199 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 HAO1Q9UJM8 370 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 CHKBQ9Y259 395 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 PLXNA1Q9UIW2 1896 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 SYNGAP1Q96PV0 1343 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 TNPO2O14787 897 aaKnown RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 MAPK13O15264 365 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 SKIP12755 728 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 KRT13P13646 458 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 SLC12A3P55017 1021 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 ACTR2P61160 394 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 STRN3Q13033 797 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 CYP1B1Q16678 543 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 PPP1R21Q6ZMI0 780 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 OTUD6AQ7L8S5 288 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 TRIM50Q86XT4 487 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 GDAP1Q8TB36 358 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 UCMAQ8WVF2 138 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 GATA6Q92908 595 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 AZIN2Q96A70 460 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 TINF2Q9BSI4 451 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 RUSC1Q9BVN2 902 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 FGFBP2Q9BYJ0 223 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 CDC42EP4Q9H3Q1 356 aaKnown RBP11.78□□□□□ -0.52
CUX1-204ENST00000393824 ACTL7BQ9Y614 415 aa11.78□□□□□ -0.52
CUX1-204ENST00000393824 DCTN3O75935 186 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 TARSP26639 723 aaKnown RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 HADHBP55084 474 aaKnown RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 MAP2K5Q13163 448 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 ZNF211Q13398 564 aaPredicted RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 TCEAL1Q15170 157 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 NFIL3Q16649 462 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 TTC27Q6P3X3 843 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 CCDC137Q6PK04 289 aaKnown RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 LNX1Q8TBB1 728 aaPredicted RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 PTPRN2Q92932 1015 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 PCYT2Q99447 389 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 POLR3CQ9BUI4 534 aaPredicted RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 MLXIPLQ9NP71 852 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 TYW1Q9NV66 732 aaKnown RBP11.77□□□□□ -0.52
CUX1-204ENST00000393824 TBC1D7Q9P0N9 293 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 SLC9A2Q9UBY0 812 aa11.77□□□□□ -0.52
CUX1-204ENST00000393824 MAGEA13PA6NCF6 341 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 SLC15A5A6NIM6 579 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 MIF4GDA9UHW6 222 aaKnown RBP11.77□□□□□ -0.53
CUX1-204ENST00000393824 HGSO14964 777 aaPredicted RBP11.77□□□□□ -0.53
CUX1-204ENST00000393824 ENTPD5O75356 428 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 STAM2O75886 525 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 KRT18P05783 430 aaKnown RBP11.77□□□□□ -0.53
CUX1-204ENST00000393824 PRKCZQ05513 592 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 USP4Q13107 963 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 GIT2Q14161 759 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 PABPC1LQ4VXU2 614 aaKnown RBP11.77□□□□□ -0.53
CUX1-204ENST00000393824 SWSAP1Q6NVH7 229 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 MYLK4Q86YV6 388 aaPredicted RBP11.77□□□□□ -0.53
CUX1-204ENST00000393824 ZDHHC14Q8IZN3 488 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms