RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 TMEM176AQ96HP8 235 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.17□□□□□ -0.465e-6■■■□□ 16.3
SMARCAL1-203ENST00000392128 ELOVL4Q9GZR5 314 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 RNF39Q9H2S5 420 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 MRPL47Q9HD33 250 aaKnown RBP12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 RBM12Q9NTZ6 932 aaKnown RBP12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 ST3GAL5Q9UNP4 418 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 SCINQ9Y6U3 715 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 TMEM110-MUSTN1A8MSY1 372 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 MYCNP04198 464 aaPredicted RBP12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 CALB1P05937 261 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 CYP3A5P20815 502 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 ITGA7Q13683 1181 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 ARHGEF6Q15052 776 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 DCAF12L1Q5VU92 463 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 C9orf57Q5W0N0 161 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 SLAIN1Q8ND83 568 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 C1orf131Q8NDD1 294 aaKnown RBP12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 RUBCNQ92622 972 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 TWNKQ96RR1 684 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 BCCIPQ9P287 314 aaKnown RBP eCLIP12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 PARP2Q9UGN5 583 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 HMGXB4Q9UGU5 601 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 ANAPC7Q9UJX3 599 aa12.17□□□□□ -0.46
SMARCAL1-203ENST00000392128 MOXD2PA6NHM9 499 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 PIRO00625 290 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 FKTNO75072 461 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CTSHP09668 335 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CD19P15391 556 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 ATF7P17544 494 aaPredicted RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 MCM3P25205 808 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CTNNA2P26232 953 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 ACLYP53396 1101 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 PRMT2P55345 433 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 PTK7Q13308 1070 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 MAMLD1Q13495 774 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 GLE1Q53GS7 698 aaKnown RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 TMCO3Q6UWJ1 677 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 WDTC1Q8N5D0 677 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 HNRNPLLQ8WVV9 542 aaKnown RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 BTBD6Q96KE9 485 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 TSEN34Q9BSV6 310 aaKnown RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 BRCA2P51587 3418 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CCDC66A2RUB6 948 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 PPEF2O14830 753 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 GPR182O15218 404 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 INHAP05111 366 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 VDRP11473 427 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CTNNA1P35221 906 aaKnown RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 THPOP40225 353 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 SLC1A1P43005 524 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 PEX5P50542 639 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CLUL1Q15846 466 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 C2CD6Q53TS8 623 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 CC2D1AQ6P1N0 951 aaPredicted RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 ZNF784Q8NCA9 323 aaPredicted RBP12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 ARRDC4Q8NCT1 418 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 ALG3Q92685 438 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 PARVAQ9NVD7 372 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 SAGE1Q9NXZ1 904 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 KLK14Q9P0G3 267 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 KIAA1257Q9ULG3 409 aa12.16□□□□□ -0.46
SMARCAL1-203ENST00000392128 MYO1FO00160 1098 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 SPOPO43791 374 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 PNPLA4P41247 253 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 NDST1P52848 882 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 VSNL1P62760 191 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 FAM26DQ5JW98 314 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 DENND1BQ6P3S1 775 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 HACE1Q8IYU2 909 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 KRT35Q92764 455 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 RNPC3Q96LT9 517 aaKnown RBP12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 ZNF560Q96MR9 790 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 NT5C1AQ9BXI3 368 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 FAM105AQ9NUU6 356 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 RNF216Q9NWF9 866 aaPredicted RBP12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 ZNF446Q9NWS9 450 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 PCDHA3Q9Y5H8 950 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 SNX9Q9Y5X1 595 aa12.15□□□□□ -0.46
SMARCAL1-203ENST00000392128 HTTP42858 3142 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 TCRBV5S1A1TA0A578 114 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 CCDC188H7C350 402 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 ERLIN1O75477 346 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 CHRM1P11229 460 aaPredicted RBP12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 RNASE9P60153 205 aaKnown RBP12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 NFX1Q12986 1120 aaKnown RBP12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 CNGA2Q16280 664 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 FBXO47Q5MNV8 452 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 LHX8Q68G74 356 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 LLGL2Q6P1M3 1020 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 ZNF296Q8WUU4 475 aaPredicted RBP12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 NAP1L3Q99457 506 aaPredicted RBP12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 LRRC1Q9BTT6 524 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 ERVK-5Q9HDB9 667 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 ARFGAP3Q9NP61 516 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 LCMT1Q9UIC8 334 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 STRIP2Q9ULQ0 834 aa12.15□□□□□ -0.47
SMARCAL1-203ENST00000392128 CAND2O75155 1236 aa12.14□□□□□ -0.47
SMARCAL1-203ENST00000392128 PROSCO94903 275 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms