RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ZNF526Q8TF50 670 aaPredicted RBP9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 HDAC7Q8WUI4 952 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 SOCS4Q8WXH5 440 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 CLMNQ96JQ2 1002 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 ATP6V1G3Q96LB4 118 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 ACAP3Q96P50 834 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 CCDC77Q9BR77 488 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 TINF2Q9BSI4 451 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 TRAIPQ9BWF2 469 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 GCOM2Q9BZD3 368 aaPredicted RBP9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 DDX47Q9H0S4 455 aaKnown RBP9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 GBA2Q9HCG7 927 aaPredicted RBP9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 CISHQ9NSE2 258 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 AMACRQ9UHK6 382 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 PACSIN2Q9UNF0 486 aaPredicted RBP9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 FAN1Q9Y2M0 1017 aa9.25□□□□□ -0.93
SNRNP40-202ENST00000373720 H3BQF6 201 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 TLR3O15455 904 aaKnown RBP9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 TCEA3O75764 348 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 ARIH2O95376 493 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CD4P01730 458 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 TFRCP02786 760 aaKnown RBP9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 PGK2P07205 417 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 MYBL2P10244 700 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CYP3A5P20815 502 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 YARSP54577 528 aaKnown RBP9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 INCA1Q0VD86 236 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 NR1H3Q13133 447 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CBLBQ13191 982 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 ACVR2BQ13705 512 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 PTK6Q13882 451 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 SGO2Q562F6 1265 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 SPRYD7Q5W111 196 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 DCUN1D2Q6PH85 259 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 B4GALNT4Q76KP1 1039 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 DPH6Q7L8W6 267 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 TRMT1LQ7Z2T5 733 aaKnown RBP9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 TMC3Q7Z5M5 1100 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 PALB2Q86YC2 1186 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 FBXO16Q8IX29 292 aaPredicted RBP9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 PRELID2Q8N945 189 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 ALG3Q92685 438 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 KAT5Q92993 513 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 ART4Q93070 314 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CENPTQ96BT3 561 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CYFIP2Q96F07 1278 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 MAML3Q96JK9 1138 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 C16orf70Q9BSU1 422 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 AP1M1Q9BXS5 423 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CAPS2Q9BXY5 557 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 FRMD8Q9BZ67 464 aaPredicted RBP9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 KATNBL1Q9H079 304 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 XYLT2Q9H1B5 865 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 CDT1Q9H211 546 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 NUB1Q9Y5A7 615 aa9.24□□□□□ -0.93
SNRNP40-202ENST00000373720 MBLAC1A4D2B0 266 aaPredicted RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 BTBD19C9JJ37 291 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TTI1O43156 1089 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 STAG3L1P0CL83 205 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 CYP2C8P10632 490 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 PYGMP11217 842 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TSHRP16473 764 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 YBX3P16989 372 aaKnown RBP eCLIP9.23□□□□□ -0.932e-10■□□□□ 11.1
SNRNP40-202ENST00000373720 RRM1P23921 792 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 PCK1P35558 622 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 PTGIRP43119 386 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 SOX10P56693 466 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TFAMQ00059 246 aaKnown RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 FSTL1Q12841 308 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TMEM132DQ14C87 1099 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 DCAF12L1Q5VU92 463 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 NAA35Q5VZE5 725 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 DNAJC24Q6P3W2 148 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 NOTUMQ6P988 496 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 SLC27A1Q6PCB7 646 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 MICALCLQ6ZW33 695 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TAOK1Q7L7X3 1001 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 GPR142Q7Z601 462 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 PLPP6Q8IY26 295 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 HACE1Q8IYU2 909 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 RIBC1Q8N443 379 aaPredicted RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 ZSWIM2Q8NEG5 633 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 OR5B17Q8NGF7 314 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 SPATA18Q8TC71 538 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 USP6NLQ92738 828 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 DDX27Q96GQ7 796 aaKnown RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 SNF8Q96H20 258 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TMEM176AQ96HP8 235 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 ZBTB45Q96K62 511 aaPredicted RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 NLRP4Q96MN2 994 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TTC25Q96NG3 672 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 ZIM3Q96PE6 472 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 TXLNGYQ9BZA5 131 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 HAPLN2Q9GZV7 340 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 APOBEC3GQ9HC16 384 aaKnown RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 ZDHHC18Q9NUE0 388 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 BARX2Q9UMQ3 279 aaPredicted RBP9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 FZD1Q9UP38 647 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 MROH7Q68CQ1 1323 aa9.23□□□□□ -0.93
SNRNP40-202ENST00000373720 DOCK5Q9H7D0 1870 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms