RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MIPEPQ99797 713 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 APOBEC3GQ9HC16 384 aaKnown RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 CYLDQ9NQC7 956 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 A6NHS1 94 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 WDR64B1ANS9 1081 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 PPP1R12AO14974 1030 aaPredicted RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 TNNI1P19237 187 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 PCK1P35558 622 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 PSMC4P43686 418 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 BPIFB4P59827 614 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 MTM1Q13496 603 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 CCDC142Q17RM4 750 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 RNASEH2BQ5TBB1 312 aaKnown RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 TXNRD3NBQ6F5E7 133 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 TAS1R3Q7RTX0 852 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 ABRAQ8N0Z2 381 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 LARGE2Q8N3Y3 721 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 SYTL5Q8TDW5 730 aaPredicted RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 ASAP3Q8TDY4 903 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 ANKRD27Q96NW4 1050 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 ANKEF1Q9NU02 776 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 IVNS1ABPQ9Y6Y0 642 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 PTGER2P43116 358 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 PTDSS1P48651 473 aaKnown RBP17.28■□□□□ 0.36
SDC4-201ENST00000372733 GPX6P59796 221 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 MORF4L2Q15014 288 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 ENDOVQ8N8Q3 282 aaKnown RBP17.28■□□□□ 0.36
SDC4-201ENST00000372733 RFWD2Q8NHY2 731 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 FEZF2Q8TBJ5 459 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 CEP170P1Q96L14 293 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 TMEM121Q9BTD3 319 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 TMOD2Q9NZR1 351 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 KANSL3Q9P2N6 904 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 SCINQ9Y6U3 715 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 CLUHO75153 1309 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 PLA2G6O60733 806 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 VNN1O95497 513 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 GLRA2P23416 452 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 CETN2P41208 172 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 IRX1P78414 480 aaPredicted RBP17.28■□□□□ 0.36
SDC4-201ENST00000372733 ZNF252P-AS1Q0IIN9 211 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 ZACNQ401N2 412 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 CENPUQ71F23 418 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 CLNKQ7Z7G1 428 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 ARMC2Q8NEN0 867 aa17.28■□□□□ 0.36
SDC4-201ENST00000372733 RBM41Q96IZ5 413 aaKnown RBP17.28■□□□□ 0.36
SDC4-201ENST00000372733 KLF6Q99612 283 aaPredicted RBP17.28■□□□□ 0.36
SDC4-201ENST00000372733 ENO4A6NNW6 628 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 GOLGA8RI6L899 631 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 C2CD2LO14523 706 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 ALOX15BO15296 676 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 ACOT2P49753 483 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 TUBP50607 506 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 JAK3P52333 1124 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 SESN3P58005 492 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 NLRP11P59045 1033 aaKnown RBP17.27■□□□□ 0.36
SDC4-201ENST00000372733 CUL2Q13617 745 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 WDR72Q3MJ13 1102 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 SLC45A4Q5BKX6 768 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 WASHC2DQ5SRD0 308 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 FYB2Q5VWT5 728 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 SPOCD1Q6ZMY3 1216 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 PHF13Q86YI8 300 aaPredicted RBP17.27■□□□□ 0.36
SDC4-201ENST00000372733 TAB3Q8N5C8 712 aaPredicted RBP17.27■□□□□ 0.36
SDC4-201ENST00000372733 RBBP8NLQ8NC74 664 aaPredicted RBP17.27■□□□□ 0.36
SDC4-201ENST00000372733 SPIRE2Q8WWL2 714 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 FNBP1Q96RU3 617 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 C10orf88Q9H8K7 445 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 RAVER2Q9HCJ3 691 aaKnown RBP17.27■□□□□ 0.36
SDC4-201ENST00000372733 ALG13Q9NP73 1137 aaKnown RBP17.27■□□□□ 0.36
SDC4-201ENST00000372733 NFASCO94856 1347 aa17.27■□□□□ 0.36
SDC4-201ENST00000372733 TESPA1A2RU30 521 aaPredicted RBP17.27■□□□□ 0.35
SDC4-201ENST00000372733 EME2A4GXA9 379 aaPredicted RBP17.27■□□□□ 0.35
SDC4-201ENST00000372733 E7ENQ6 273 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 SGK1O00141 431 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 TRAFD1O14545 582 aaPredicted RBP17.27■□□□□ 0.35
SDC4-201ENST00000372733 ZNF862O60290 1169 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 TJP3O95049 919 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 ATP6V1C1P21283 382 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 PTPN4P29074 926 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 SSTR1P30872 391 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 RASSF2P50749 326 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 VCPP55072 806 aaKnown RBP17.27■□□□□ 0.35
SDC4-201ENST00000372733 TFDP1Q14186 410 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 PGM5Q15124 567 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 OASLQ15646 514 aaKnown RBP17.27■□□□□ 0.35
SDC4-201ENST00000372733 CTC1Q2NKJ3 1217 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 EFHC2Q5JST6 749 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 TRIM72Q6ZMU5 477 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.27■□□□□ 0.35
SDC4-201ENST00000372733 RCOR2Q8IZ40 523 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 SAMD3Q8N6K7 520 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 LBHD1Q9BQE6 289 aaPredicted RBP17.27■□□□□ 0.35
SDC4-201ENST00000372733 SENP7Q9BQF6 1050 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 SLC24A2Q9UI40 661 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 SHOC2Q9UQ13 582 aa17.27■□□□□ 0.35
SDC4-201ENST00000372733 DPPA5A6NC42 116 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 F8VP50 259 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 GARTP22102 1010 aa17.26■□□□□ 0.35
SDC4-201ENST00000372733 PLCB3Q01970 1234 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms