RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 HCSTQ9UBK5 93 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 USP27XA6NNY8 438 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 HUS1O60921 280 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 KIF4AO95239 1232 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 FGBP02675 491 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 ITGB1P05556 798 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 MMEP08473 750 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 GNA15P30679 374 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 FMO1Q01740 532 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 CDR2Q01850 454 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 ORC1Q13415 861 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 DPH6Q7L8W6 267 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 CCAR2Q8N163 923 aaKnown RBP21.22■□□□□ 0.99
CLN3-205ENST00000359984 PDCL2Q8N4E4 241 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 SLC4A11Q8NBS3 891 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 HASPINQ8TF76 798 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 KBTBD7Q8WVZ9 684 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 ZMYND8Q9ULU4 1186 aaPredicted RBP21.22■□□□□ 0.99
CLN3-205ENST00000359984 NME7Q9Y5B8 376 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 CCDC175P0C221 793 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 OR1G1P47890 313 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 SPA17Q15506 151 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 DSTYKQ6XUX3 929 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 TMEM176AQ96HP8 235 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 KCND1Q9NSA2 647 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 NENFQ9UMX5 172 aa21.22■□□□□ 0.99
CLN3-205ENST00000359984 IPO7O95373 1038 aaKnown RBP21.21■□□□□ 0.99
CLN3-205ENST00000359984 PAEPP09466 180 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 BRCC3P46736 316 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 KRT83P78385 493 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 TMEM240Q5SV17 173 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 WSCD1Q658N2 575 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 PALB2Q86YC2 1186 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 ADGRF2Q8IZF7 708 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 OR6B3Q8NGW1 331 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 DPF3Q92784 378 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 PCDHB18PQ96TA0 734 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 ZSWIM1Q9BR11 485 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 SEPT11Q9NVA2 429 aaKnown RBP21.21■□□□□ 0.99
CLN3-205ENST00000359984 PUF60Q9UHX1 559 aaKnown RBP21.21■□□□□ 0.99
CLN3-205ENST00000359984 NAGPAQ9UK23 515 aa21.21■□□□□ 0.99
CLN3-205ENST00000359984 A0A0U1RQJ8 604 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 I3L4J1 428 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 THAP12O43422 761 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 PAX3P23760 479 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 GNL1P36915 607 aaPredicted RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 FAM117BQ6P1L5 589 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 ZNF677Q86XU0 584 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 LRRC43Q8N309 656 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 ZNF606Q8WXB4 792 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 ATRIPQ8WXE1 791 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 TFAP2BQ92481 460 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 ZNF689Q96CS4 500 aaPredicted RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 NT5C1AQ9BXI3 368 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 PRG3Q9Y2Y8 225 aaPredicted RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 PCDHA13Q9Y5I0 950 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 FNDC1Q4ZHG4 1894 aaPredicted RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 TMEM189-UBE2V1I3L0A0 370 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 NRP1O14786 923 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 FAM163BP0C2L3 166 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 WARSP23381 471 aaKnown RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 BRD2P25440 801 aaKnown RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 ALKBH5Q6P6C2 394 aaKnown RBP21.2■□□□□ 0.98
CLN3-205ENST00000359984 UNC93AQ86WB7 457 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 REXO1L1PQ8IX06 675 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.2■□□□□ 0.983e-6■□□□□ 10.1
CLN3-205ENST00000359984 SNX25Q9H3E2 840 aa21.2■□□□□ 0.98
CLN3-205ENST00000359984 ZBBXA8MT70 800 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 ZSCAN12O43309 604 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 HCRTO43612 131 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 ALDH2P05091 517 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 CFHP08603 1231 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 LMO2P25791 158 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 MAGEA1P43355 309 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 SLC11A1P49279 550 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 CCDC122Q5T0U0 273 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 OSTM1Q86WC4 334 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 PPP1R13BQ96KQ4 1090 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 SUSD3Q96L08 255 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 RC3H2Q9HBD1 1191 aaKnown RBP21.19■□□□□ 0.98
CLN3-205ENST00000359984 TIMM13Q9Y5L4 95 aaPredicted RBP21.19■□□□□ 0.98
CLN3-205ENST00000359984 COL4A6Q14031 1691 aa21.19■□□□□ 0.98
CLN3-205ENST00000359984 A8MXQ7 604 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 M0QZQ0 153 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 CD19P15391 556 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 SSTR3P32745 418 aaPredicted RBP21.18■□□□□ 0.98
CLN3-205ENST00000359984 PSRC1Q6PGN9 363 aaPredicted RBP21.18■□□□□ 0.98
CLN3-205ENST00000359984 DNAAF5Q86Y56 855 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 TMEM86AQ8N2M4 240 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 HEXIM2Q96MH2 286 aaKnown RBP21.18■□□□□ 0.98
CLN3-205ENST00000359984 TMEM175Q9BSA9 504 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 TAS2R14Q9NYV8 317 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 TFR2Q9UP52 801 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 STXBP5LQ9Y2K9 1186 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 RCCD1A6NED2 376 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 GABRDO14764 452 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 GALTP07902 379 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 PDGFRBP09619 1106 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 ODC1P11926 461 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms