RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PJA2O43164 708 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 SLC1A1P43005 524 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 KLK7P49862 253 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 FAM161BQ96MY7 647 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 PCDHB12Q9Y5F1 795 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 TBKBP1A7MCY6 615 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 NDUFB5O43674 189 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 SKIP12755 728 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 ABTB1Q969K4 478 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 NMRK2Q9NPI5 230 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 MARCOQ9UEW3 520 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 FBXL21Q9UKT6 434 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 SYNCRIPO60506 623 aaKnown RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 TJAP1Q5JTD0 557 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 KAT2BQ92831 832 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 MTMR12Q9C0I1 747 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 SLC9A1P19634 815 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 LY6KQ17RY6 165 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 RABL6Q3YEC7 729 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 METTL16Q86W50 562 aaKnown RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 COG1Q8WTW3 980 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 NFKBIZQ9BYH8 718 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 FHOD1Q9Y613 1164 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 ANGPT2O15123 496 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 SEC24DO94855 1032 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 GALCP54803 685 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 CCDC15Q0P6D6 951 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 PCSK9Q8NBP7 692 aaKnown RBP16.29■□□□□ 0.2
PTPRF-201ENST00000359947 ATL2Q8NHH9 583 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 ARHGEF26Q96DR7 871 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 MTA3Q9BTC8 594 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 CHST12Q9NRB3 414 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 SCOCQ9UIL1 159 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 CDC42BPAQ5VT25 1732 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 MYO1GB0I1T2 1018 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 ADM5C9JUS6 153 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 GUCY2CP25092 1073 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 WDR35Q9P2L0 1181 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 CFAP99D6REC4 459 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 UCHL3P15374 230 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 MAP3K7CLP57077 242 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 DMC1Q14565 340 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 ATP6V0D2Q8N8Y2 350 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 PCMTD2Q9NV79 361 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 SETD4Q9NVD3 440 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 SPASTQ9UBP0 616 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 TBX20Q9UMR3 447 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 RRP15Q9Y3B9 282 aaKnown RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 MRPL42Q9Y6G3 142 aaKnown RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 MAFGO15525 162 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 DDX5P17844 614 aaKnown RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 STK4Q13043 487 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 OSMRQ99650 979 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 TMA16Q96EY4 203 aaKnown RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 TAF1DQ9H5J8 278 aaPredicted RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 SNX5Q9Y5X3 404 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 GPR75-ASB3A0A0A6YYF3 556 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 RNASEH1O60930 286 aaKnown RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 HAUS5O94927 633 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 CKBP12277 381 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 KLRC1P26715 233 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 KLRC2P26717 231 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 POLE2P56282 527 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 EFEMP1Q12805 493 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 SEPT8Q92599 483 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 CHP1Q99653 195 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 DNAJC5Q9H3Z4 198 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 CHMP2BQ9UQN3 213 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 CNTNAP4Q9C0A0 1308 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 PSMD3O43242 534 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 EFHC1Q5JVL4 640 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 INTS5Q6P9B9 1019 aaKnown RBP16.28■□□□□ 0.2
PTPRF-201ENST00000359947 RD3Q7Z3Z2 195 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 JADE3Q92613 823 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 TMEM8AQ9HCN3 771 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.28■□□□□ 0.26e-6■□□□□ 10.5
PTPRF-201ENST00000359947 GGT7Q9UJ14 662 aa16.28■□□□□ 0.2
PTPRF-201ENST00000359947 ADGRB3O60242 1522 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 F5H5T6 163 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 CSF1RP07333 972 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 KPNA1P52294 538 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-201ENST00000359947 KCNV2Q8TDN2 545 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 SMAD5Q99717 465 aaKnown RBP16.27■□□□□ 0.2
PTPRF-201ENST00000359947 OSGEPL1Q9H4B0 414 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 AGPAT5Q9NUQ2 364 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 AVPR1AP37288 418 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 MAPK9P45984 424 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 C2CD6Q53TS8 623 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 MTHFD1LQ6UB35 978 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 MAN1C1Q9NR34 630 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 RHOBTB1O94844 696 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 ZC3H15Q8WU90 426 aaKnown RBP16.27■□□□□ 0.2
PTPRF-201ENST00000359947 TRIM51Q9BSJ1 452 aa16.27■□□□□ 0.2
PTPRF-201ENST00000359947 TIMM13Q9Y5L4 95 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-201ENST00000359947 EXOSC10Q01780 885 aaKnown RBP16.27■□□□□ 0.19
PTPRF-201ENST00000359947 LRRC7Q96NW7 1537 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 EIF4E1BA6NMX2 242 aaKnown RBP16.27■□□□□ 0.19
PTPRF-201ENST00000359947 PCDH8O95206 1070 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 TMED1Q13445 227 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 UCMAQ8WVF2 138 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms