RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LRCH1Q9Y2L9 728 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 OVOS2A0A0G2JMS6 1433 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 LBRQ14739 615 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 STXBP2Q15833 593 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 SEMA6BQ9H3T3 888 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 C10orf88Q9H8K7 445 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 RPA1P27694 616 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ADORA2BP29275 332 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 CLEC10AQ8IUN9 316 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 FAM71DQ8N9W8 422 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 PDCD6IPQ8WUM4 868 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF512BQ96KM6 892 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 CNDP1Q96KN2 507 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 SIK2Q9H0K1 926 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 CDYLQ9Y232 598 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 BNIP3LO60238 219 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 SRP72O76094 671 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF302Q9NR11 478 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 AIPL1Q9NZN9 384 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 FAM8A1Q9UBU6 413 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 TEKT2Q9UIF3 430 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 HSPA1AP0DMV8 641 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 HSPA1BP0DMV9 641 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 CENPPQ6IPU0 288 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 PARD3BQ8TEW8 1205 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 WHRNQ9P202 907 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 ATP8B3O60423 1300 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 HNRNPCL2B2RXH8 293 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 GYS1P13807 737 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 PHKA2P46019 1235 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 NCOA4Q13772 614 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 FEM1BQ9UK73 627 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 COL3A1P02461 1466 aaPredicted RBP20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 KRT16P08779 473 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 TRIM60Q495X7 471 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 TTC39CQ8N584 583 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 EGFL8Q99944 293 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 PLA2G12BQ9BX93 195 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 SEPT3Q9UH03 358 aa20.41■□□□□ 0.86
CCDC88B-202ENST00000356786 SALL3Q9BXA9 1300 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 TMEM247A6NEH6 219 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 A8MXQ7 604 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 WLSQ5T9L3 541 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF571Q7Z3V5 609 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 TMC3Q7Z5M5 1100 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 MICU2Q8IYU8 434 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 RNF146Q9NTX7 359 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 E5RI56 91 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 TRAPPC3O43617 180 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 CLK1P49759 484 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 ALDH5A1P51649 535 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 VCPP55072 806 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 UGP2Q16851 508 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 B4GALNT2Q8NHY0 566 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 RIMS1Q86UR5 1692 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 STRNO43815 780 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 CDC25CP30307 473 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 NLRP11P59045 1033 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 RASA2Q15283 850 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 DNAAF5Q86Y56 855 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 CREG2Q8IUH2 290 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 ABI1Q8IZP0 508 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 FEZF2Q8TBJ5 459 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 KCND1Q9NSA2 647 aa20.4■□□□□ 0.86
CCDC88B-202ENST00000356786 EIF3DO15371 548 aaKnown RBP eCLIP20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 TBC1D4O60343 1298 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 IFNA8P32881 189 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 NPEPPSP55786 919 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 MAP3K10Q02779 954 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 GRB10Q13322 594 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 DMC1Q14565 340 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 KDELC2Q7Z4H8 507 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 P4HA2O15460 535 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 CIITAP33076 1130 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 IFI35P80217 286 aaPredicted RBP20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 PDIA6Q15084 440 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 MIEF2Q96C03 454 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 RSAD1Q9HA92 442 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 IL1RL2Q9HB29 575 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 MAD2L2Q9UI95 211 aa20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 HERC5Q9UII4 1024 aaKnown RBP20.39■□□□□ 0.86
CCDC88B-202ENST00000356786 WDR47O94967 919 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 PSMC3P17980 439 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 VCAM1P19320 739 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 CCNA1P78396 465 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 GPR141Q7Z602 305 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 PI4K2AQ9BTU6 479 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 C2orf40Q9H1Z8 148 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 AP4S1Q9Y587 144 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 PXDNLA1KZ92 1463 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 PTENP60484 403 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 PREPLQ4J6C6 727 aaPredicted RBP20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 NAALADL1Q9UQQ1 740 aa20.39■□□□□ 0.85
CCDC88B-202ENST00000356786 ELF3P78545 371 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 SLC10A5Q5PT55 438 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 WASHC2DQ5SRD0 308 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 BEST2Q8NFU1 509 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 ACSF2Q96CM8 615 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 TMEM8AQ9HCN3 771 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 MRGBPQ9NV56 204 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms