RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 ZNF558Q96NG5 402 aa20.31■□□□□ 0.84
CHMP4A-201ENST00000347519 PCDHB8Q9UN66 801 aa20.31■□□□□ 0.84
CHMP4A-201ENST00000347519 TACC1O75410 805 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 PTMAP06454 111 aaKnown RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 PLEKP08567 350 aaPredicted RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 LAG3P18627 525 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 WARSP23381 471 aaKnown RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 LMO2P25791 158 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 TKTP29401 623 aaKnown RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 HNRNPH3P31942 346 aaKnown RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 ALDH7A1P49419 539 aaKnown RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 RAD23BP54727 409 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 HGSNATQ68CP4 663 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 FUT10Q6P4F1 479 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 TMEM139Q8IV31 216 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 CLP1Q92989 425 aaKnown RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 IGSF21Q96ID5 467 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 B3GALT6Q96L58 329 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 ZNF830Q96NB3 372 aaPredicted RBP20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 PANX2Q96RD6 677 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 CHP1Q99653 195 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 RTP3Q9BQQ7 232 aa20.3■□□□□ 0.84
CHMP4A-201ENST00000347519 PLXNA4Q9HCM2 1894 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 GOLGA6L6A8MZA4 724 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 GABRDO14764 452 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 CYP11A1P05108 521 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 ODC1P11926 461 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 PBX2P40425 430 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 MEA1Q16626 185 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 DPH6Q7L8W6 267 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 SLC47A2Q86VL8 602 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 OR6B3Q8NGW1 331 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 OLIG1Q8TAK6 271 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 SYN2Q92777 582 aaPredicted RBP20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 LPIN3Q9BQK8 851 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 KCNF1Q9H3M0 494 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 DPEP3Q9H4B8 488 aa20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 BARX2Q9UMQ3 279 aaPredicted RBP20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 YBX2Q9Y2T7 364 aaKnown RBP20.29■□□□□ 0.84
CHMP4A-201ENST00000347519 LINC01553A4QN01 128 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 PDGFRBP09619 1106 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 FERP16591 822 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 FECHP22830 423 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 PAX3P23760 479 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 BMP8BP34820 402 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 GNL1P36915 607 aaPredicted RBP20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 YWHAEP62258 255 aaKnown RBP20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 CCDC142Q17RM4 750 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 FAM171A1Q5VUB5 890 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 KIAA0319Q5VV43 1072 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 LRRC8AQ8IWT6 810 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 RNF168Q8IYW5 571 aaPredicted RBP20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 SLC4A11Q8NBS3 891 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 SLC20A1Q8WUM9 679 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 ZSWIM1Q9BR11 485 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 NUCKS1Q9H1E3 243 aaKnown RBP20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 ARHGAP20Q9P2F6 1191 aa20.28■□□□□ 0.84
CHMP4A-201ENST00000347519 TYMPP19971 482 aa20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 FGFR3P22607 806 aa20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 ACAT1P24752 427 aaKnown RBP20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 DEKP35659 375 aaKnown RBP20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 PRKCIP41743 596 aa20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 NOP9Q86U38 636 aaKnown RBP20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 SNX25Q9H3E2 840 aa20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 SPG21Q9NZD8 308 aa20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 STXBP5LQ9Y2K9 1186 aa20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 RANBP2P49792 3224 aaKnown RBP20.27■□□□□ 0.84
CHMP4A-201ENST00000347519 SF3B1O75533 1304 aaKnown RBP eCLIP20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 A8MXQ7 604 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 ATP2C2O75185 946 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 FAM163BP0C2L3 166 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 CHRNB2P17787 502 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 SSTR3P32745 418 aaPredicted RBP20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 CCZ1BP86790 482 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 CCZ1P86791 482 aaPredicted RBP20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 RTP2Q5QGT7 225 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 ZNF571Q7Z3V5 609 aaPredicted RBP20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 ACOT1Q86TX2 421 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 TMEM86AQ8N2M4 240 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 TFAP2BQ92481 460 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 TMEM176AQ96HP8 235 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 TMEM209Q96SK2 561 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 C17orf80Q9BSJ5 609 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 SYT11Q9BT88 431 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 PRO3102Q9H379 93 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 HAUS4Q9H6D7 363 aa20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 DDX43Q9NXZ2 648 aaKnown RBP20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 NOCTQ9UK39 431 aaKnown RBP20.26■□□□□ 0.83
CHMP4A-201ENST00000347519 A0A1W2PPC1 479 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 TRAPPC3O43617 180 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 SERPING1P05155 500 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 CA3P07451 260 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 CFHP08603 1231 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 CYP11B1P15538 503 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 BRD2P25440 801 aaKnown RBP20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 PTK2Q05397 1052 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 KLHL30Q0D2K2 578 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 VARS2Q5ST30 1063 aaKnown RBP20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 TAF3Q5VWG9 929 aa20.25■□□□□ 0.83
CHMP4A-201ENST00000347519 UNC93AQ86WB7 457 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms