RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ENTPD7Q9NQZ7 604 aa23.72■■□□□ 1.39
SDC3-202ENST00000339394 MRPL17Q9NRX2 175 aaKnown RBP23.72■■□□□ 1.39
SDC3-202ENST00000339394 LILRB3O75022 631 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 NOL4O94818 638 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 CXCL14O95715 111 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 UCHL3P15374 230 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 IRS1P35568 1242 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 LHX1P48742 406 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 GRIN2CQ14957 1233 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 PTPN14Q15678 1187 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 ZNF697Q5TEC3 545 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 ANKS3Q6ZW76 656 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 OSTM1Q86WC4 334 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 SPATA18Q8TC71 538 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 MICAL1Q8TDZ2 1067 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 KREMEN1Q96MU8 473 aa23.71■■□□□ 1.39
SDC3-202ENST00000339394 NGRNQ9NPE2 291 aaKnown RBP23.71■■□□□ 1.39
SDC3-202ENST00000339394 GOLGA6L3A6NEY3 463 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 EPHB6O15197 1021 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 CD58P19256 250 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 WARSP23381 471 aaKnown RBP23.7■■□□□ 1.38
SDC3-202ENST00000339394 LMO2P25791 158 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 GNL1P36915 607 aaPredicted RBP23.7■■□□□ 1.38
SDC3-202ENST00000339394 BMS1Q14692 1282 aaKnown RBP23.7■■□□□ 1.38
SDC3-202ENST00000339394 GPR65Q8IYL9 337 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 OR6B3Q8NGW1 331 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 RTP3Q9BQQ7 232 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 LMAN2LQ9H0V9 348 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 PRDM12Q9H4Q4 367 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 CISHQ9NSE2 258 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 DDX43Q9NXZ2 648 aaKnown RBP23.7■■□□□ 1.38
SDC3-202ENST00000339394 AJAP1Q9UKB5 411 aaPredicted RBP23.7■■□□□ 1.38
SDC3-202ENST00000339394 PCDHGC5Q9Y5F6 944 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 IRAK3Q9Y616 596 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 NLRC5Q86WI3 1866 aa23.7■■□□□ 1.38
SDC3-202ENST00000339394 FSD2A1L4K1 749 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 FSCN2O14926 492 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 INCA1Q0VD86 236 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 PSMD5Q16401 504 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 PLPP4Q5VZY2 271 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 IQCEQ6IPM2 695 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 PDXDC1Q6P996 788 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 ENOSF1Q7L5Y1 443 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 MRPL43Q8N983 215 aaKnown RBP23.69■■□□□ 1.38
SDC3-202ENST00000339394 NEK11Q8NG66 645 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 FAM81BQ96LP2 452 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 GANQ9H2C0 597 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 SNX25Q9H3E2 840 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 MTRRQ9UBK8 725 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 DNAJC12Q9UKB3 198 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 SSX2IPQ9Y2D8 614 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 STXBP5LQ9Y2K9 1186 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 NME7Q9Y5B8 376 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 FHOD1Q9Y613 1164 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 HIDE1A8MVS5 230 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 H7C4K7 107 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 HCRTO43612 131 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 TBC1D4O60343 1298 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 CA8P35219 290 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 MFAP3P55082 362 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 SMC1AQ14683 1233 aaKnown RBP23.69■■□□□ 1.38
SDC3-202ENST00000339394 CTXN3Q4LDR2 81 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 ZNF280DQ6N043 979 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 RSPO2Q6UXX9 243 aaPredicted RBP23.69■■□□□ 1.38
SDC3-202ENST00000339394 THEM5Q8N1Q8 247 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 FAM161BQ96MY7 647 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 NAA15Q9BXJ9 866 aaKnown RBP23.69■■□□□ 1.38
SDC3-202ENST00000339394 FAM124BQ9H5Z6 455 aaPredicted RBP23.69■■□□□ 1.38
SDC3-202ENST00000339394 FBXL5Q9UKA1 691 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 BARX2Q9UMQ3 279 aaPredicted RBP23.69■■□□□ 1.38
SDC3-202ENST00000339394 BACE2Q9Y5Z0 518 aa23.69■■□□□ 1.38
SDC3-202ENST00000339394 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.68■■□□□ 1.38
SDC3-202ENST00000339394 A8MXQ7 604 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 CILPO75339 1184 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 PDGFRBP09619 1106 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 RPL17P18621 184 aaKnown RBP23.68■■□□□ 1.38
SDC3-202ENST00000339394 ACO1P21399 889 aaKnown RBP23.68■■□□□ 1.38
SDC3-202ENST00000339394 RFX1P22670 979 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 NDST1P52848 882 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 POLR2FP61218 127 aaKnown RBP23.68■■□□□ 1.38
SDC3-202ENST00000339394 ARHGAP44Q17R89 818 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 PDE12Q6L8Q7 609 aaKnown RBP23.68■■□□□ 1.38
SDC3-202ENST00000339394 GPR153Q6NV75 609 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 UBR7Q8N806 425 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 OR10T2Q8NGX3 314 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 JAKMIP2Q96AA8 810 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 CLSTN3Q9BQT9 956 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 ACBD6Q9BR61 282 aa23.68■■□□□ 1.38
SDC3-202ENST00000339394 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.68■■□□□ 1.38
SDC3-202ENST00000339394 C2orf71A6NGG8 1288 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 TRIM21P19474 475 aaKnown RBP23.67■■□□□ 1.38
SDC3-202ENST00000339394 ACAT1P24752 427 aaKnown RBP23.67■■□□□ 1.38
SDC3-202ENST00000339394 PTPROQ16827 1216 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 TTC39CQ8N584 583 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 WHAMMQ8TF30 809 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 MRPL38Q96DV4 380 aaKnown RBP23.67■■□□□ 1.38
SDC3-202ENST00000339394 GRPEL1Q9HAV7 217 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 RXFP1Q9HBX9 757 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 HMGXB4Q9UGU5 601 aa23.67■■□□□ 1.38
SDC3-202ENST00000339394 CDY1Q9Y6F8 540 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms